ARABIDOPSIS annotation definitions ---------------------------------- 10-4-2001 Common annotations were compiled by Nicole Hauser, Judith Boer, Rosa Arribas, Frank Diehl and have been checked for MIAME2 compliance. Organism specific part by Marcel Scheideler and Nikolaus Schlaich, who considered the complete list to satisfy MIAME2 standard. References, images (tiff format), a list of array elements incl. controls (including gene/clone IDs, array location, descriptions and functional catalogue entries for each spot) as well as normalization strategies and algorithms are not included here but will be available in the results section or directly from the authors. heading1no heading1 heading2no heading2 heading3no heading3 1 common_annotations 1 array 1 - 1 common_annotations 2 hybridisation 2 RNA_preparation 1 common_annotations 2 hybridisation 3 labeling 1 common_annotations 2 hybridisation 4 hybridisation_conditions 1 common_annotations 2 hybridisation 5 stringency_wash 1 common_annotations 2 hybridisation 6 detection 1 common_annotations 3 sample 7 - 1 common_annotations 4 submission 8 - 2 organism_specific_annotations 5 genotype 9 - 2 organism_specific_annotations 5 genotype 10 transgenes_ordered_by_no_in_y1_genes 2 organism_specific_annotations 5 genotype 11 markers_transposons_tags 2 organism_specific_annotations 6 growth_conditions 12 - 2 organism_specific_annotations 6 growth_conditions 13 field 2 organism_specific_annotations 6 growth_conditions 14 greenhouse 2 organism_specific_annotations 6 growth_conditions 15 phytochamber 2 organism_specific_annotations 6 growth_conditions 16 in_vitro 2 organism_specific_annotations 7 treatment 17 - 2 organism_specific_annotations 7 treatment 18 mechanical_stress 2 organism_specific_annotations 7 treatment 19 auxins 2 organism_specific_annotations 7 treatment 20 cytokinins 2 organism_specific_annotations 7 treatment 21 pathogens 2 organism_specific_annotations 8 sampling 22 when 2 organism_specific_annotations 8 sampling 23 what lastheadingno ano nextano annotation vno nextvno value 1 1 2 array_source 10 11 self_made 1 1 2 array_source 11 12 genome_systems 1 1 2 array_source 12 13 clontech 1 1 2 array_source 13 14 research_genetics 1 2 3 array_series 0 0 [] 1 3 4 array_individual 0 0 [] 1 4 67 array_support 14 15 nylon 1 4 67 array_support 15 16 polypropylene 1 4 67 array_support 16 117 glass 1 67 68 array_support_width 0 0 [mm] 1 68 41 array_support_length 0 0 [mm] 1 41 42 array_surface_chemistry 117 118 unknown_positive_charge 1 41 42 array_surface_chemistry 118 119 poly_L_lysine 1 41 42 array_surface_chemistry 119 120 aldehyde 1 41 42 array_surface_chemistry 120 121 aminosilane 1 42 43 support_manufacturer 121 122 Hybond 1 42 43 support_manufacturer 122 123 Pall 1 42 43 support_manufacturer 123 124 TeleChem 1 42 43 support_manufacturer 124 125 Corning 1 42 43 support_manufacturer 125 126 diehl 1 42 43 support_manufacturer 126 127 stephan 1 43 44 Hybond_support_brand 127 128 non_Hybond 1 43 44 Hybond_support_brand 128 129 N+ 1 44 45 Pall_support_brand 129 130 non_Pall 1 44 45 Pall_support_brand 130 131 Biodyne_B 1 45 46 Corning_support_brand 131 132 non_Corning 1 45 46 Corning_support_brand 132 133 CMT_GAPS 1 46 5 TeleChem_support_brand 133 134 non_TeleChem 1 46 5 TeleChem_support_brand 134 135 Aldehyde 1 46 5 TeleChem_support_brand 135 17 SuperAldehyde 1 5 69 spotted_material 17 18 PCR 1 5 69 spotted_material 18 19 colonies 1 5 69 spotted_material 19 20 DNA-oligo 1 5 69 spotted_material 20 200 PNA-oligo 1 69 70 spotted_material_property 200 201 single_stranded 1 69 70 spotted_material_property 201 202 double_stranded 1 70 71 number_of_elements_on_array_(without_duplicates) 0 0 [] 1 71 47 elements_spotted_as 202 203 single 1 71 47 elements_spotted_as 203 204 duplicate 1 71 47 elements_spotted_as 204 136 triplicate 1 47 48 spotted_material_purification 136 137 non 1 47 48 spotted_material_purification 137 138 isopropanol_precipitation 1 47 48 spotted_material_purification 138 139 QIAquick 1 47 48 spotted_material_purification 139 140 Multiscreen_NU_Millipore 1 48 49 spotting_buffer 140 141 1.5M_NaCl_0.5M_NaOH 1 48 49 spotting_buffer 141 142 28mM_EDC_4.4volpromill_NMI 1 48 49 spotting_buffer 142 143 spottingsolution_by_diehl 1 48 49 spotting_buffer 143 144 MicroSpotting_solution_TeleChem 1 48 49 spotting_buffer 144 145 3xSSC 1 48 49 spotting_buffer 145 146 3xSSC_50%DMSO 1 49 50 spotting_robot 146 147 SDDC-2_ESI 1 49 50 spotting_robot 147 148 Biogrid_Biorobotics 1 49 50 spotting_robot 148 149 Microgrid_II_Biorobotics 1 49 50 spotting_robot 149 150 Omnigrid_Genemachines 1 49 50 spotting_robot 150 151 QArray_Genetix 1 50 51 spotting_pins 151 152 solid 1 50 51 spotting_pins 152 153 SMP-3_Telechem 1 50 51 spotting_pins 153 154 Biogrid_Biorobotics 1 51 52 relative_humidity 154 155 defined 1 51 52 relative_humidity 155 156 estimated 1 51 52 relative_humidity 156 157 unknown(enter_0%) 1 52 53 relative_humidity 0 0 [%] 1 53 54 temperature 157 158 defined 1 53 54 temperature 158 159 estimated 1 53 54 temperature 159 160 unknown(enter_0deg.C) 1 54 55 temperature 0 0 [deg.C] 1 55 6 postprocessing 160 161 neutralizing_by_1.5MNaCL_0.5MTrispH7.5_1mMEDTA 1 55 6 postprocessing 161 162 2h_at_65deg.C 1 55 6 postprocessing 162 163 succinic_anhydride_Stanford_protocol 1 55 6 postprocessing 163 164 succinic_anhydride_protocol_by_diehl 1 55 6 postprocessing 164 165 BSA_Tigr_protocol 1 55 6 postprocessing 165 21 NaBH4_Telechem_protocol 1 6 7 readfile 0 0 [] 1 7 8 array_hybridisation 0 0 [] 2 8 9 material_source 21 22 fresh 2 8 9 material_source 22 23 frozen 2 8 9 material_source 23 94 RNA_later 2 8 9 material_source 94 24 cDNA_subtraction 2 9 10 preparation_of_total_RNA 24 25 trizol 2 9 10 preparation_of_total_RNA 25 26 columns 2 9 10 preparation_of_total_RNA 26 95 phenol 2 9 10 preparation_of_total_RNA 95 27 not_applicable 2 10 11 preparation_of_PolyA+ 27 28 none 2 10 11 preparation_of_PolyA+ 28 29 dynabeads 2 10 11 preparation_of_PolyA+ 29 30 oligotex 2 10 11 preparation_of_PolyA+ 30 96 cellulose 2 10 11 preparation_of_PolyA+ 96 31 not_applicable 3 11 40 amount_of_RNA 0 0 [microgram] 3 40 12 amount_of_cDNA 0 0 [microgram] 3 12 13 enzym 31 32 superscript 3 12 13 enzym 32 33 AMV 3 12 13 enzym 33 166 M-MLV 3 12 13 enzym 166 97 OmniScript 3 12 13 enzym 97 34 klenow 3 13 14 priming 34 35 oligo_dT 3 13 14 priming 35 36 anchored_oligo_dT 3 13 14 priming 36 37 random_hexamer 3 13 14 priming 37 98 combined_oligo_dT-random_hexamer 3 13 14 priming 98 38 pcr_select 3 14 56 nucleotide 38 39 dCTP 3 14 56 nucleotide 39 167 dATP 3 14 56 nucleotide 167 168 aa-dUTP 3 14 56 nucleotide 168 169 dUTP 3 56 15 nucleotide_removal 169 170 G50_Pharmacia 3 56 15 nucleotide_removal 170 171 ammium_acetate_isopropanol_precipitation 3 56 15 nucleotide_removal 171 172 QIAquick_Qiagen 3 56 15 nucleotide_removal 172 173 GFX_columns_Pharmacia 3 56 15 nucleotide_removal 173 40 YM30_Amicon 3 15 66 label 40 41 33P 3 15 66 label 41 42 32P 3 15 66 label 42 43 Cy3 3 15 66 label 43 174 Cy5 3 15 66 label 174 175 Alexa488 3 15 66 label 175 193 Alexa594 3 66 38 days_from_calibration_date_applicable 193 194 yes 3 66 38 days_from_calibration_date_applicable 194 44 no(enter_0d) 3 38 16 days_from_calibration_date 0 0 [d] 3 16 17 label_incorporation_rate 0 0 [%] 3 17 18 total_activity 0 0 [cpm] 4 18 57 buffer 44 45 0.5M_Na_phosphate_pH7.2_7%_SDS 4 18 57 buffer 45 46 5x_SSC_5x_denhardts_0.5%_SDS 4 18 57 buffer 46 47 4x_SSC_7.2%_Na_sarcosyl 4 18 57 buffer 47 48 Clontech_Express_hyb 4 18 57 buffer 48 176 ambion_Northern_max 4 57 19 prehybridization_without_target 176 177 no 4 57 19 prehybridization_without_target 177 49 yes 4 19 75 competitors 49 50 none 4 19 75 competitors 50 51 tRNA 4 19 75 competitors 51 52 Cot1 4 19 75 competitors 52 53 dA40 4 19 75 competitors 53 99 salmon_sperm 4 19 75 competitors 99 100 dA40_Cot1_salmonsperm 4 19 75 competitors 100 101 dA40_Cot1_tRNA_salmonsperm 4 19 75 competitors 101 102 dA40_Cot1_specificoligos_salmonsperm 4 19 75 competitors 102 211 dA40_Cot1_specificoligos_tRNA_salmonsperm 4 75 76 hybridisation_device 211 212 water_bath 4 75 76 hybridisation_device 212 213 rotating_oven 4 76 20 hybridisation_instrument 213 214 hybridisation_bottle 4 76 20 hybridisation_instrument 214 215 hybridisation_chamber_corning 4 76 20 hybridisation_instrument 215 216 hybridisation_chamber_ArrayIt 4 76 20 hybridisation_instrument 216 178 hybridisation_chamber_ClonTech 4 20 21 hybridisation_temp 0 0 [deg.C] 4 21 58 buffer_volume 0 0 [ml] 4 58 59 coverslip_used 178 179 no_(enter_size_0) 4 58 59 coverslip_used 179 54 yes 4 59 22 coverslip_size 0 0 [mmxmm] 4 22 23 hybridisation_length 0 0 [h] 5 23 24 wash_buffer 54 55 0.1xSSC_0.1%SDS 5 23 24 wash_buffer 55 56 0.6xSSC_1%SDS 5 23 24 wash_buffer 56 57 0.2xSSC_0.1%SDS 5 23 24 wash_buffer 57 180 40mMNaPipH7_0.1%SDS 5 24 25 times 0 0 [] 5 25 26 wash_length 0 0 [min] 5 26 60 temperature 0 0 [deg.C] 6 60 27 exposure_time_applicable 180 181 yes 6 60 27 exposure_time_applicable 181 58 no_(enter_0h) 6 27 28 exposure_time 0 0 [h] 6 28 72 measuring_device 58 59 MD_storm860_phos 6 28 72 measuring_device 59 60 MD_storm860_red 6 28 72 measuring_device 60 113 MD_storm860_blue 6 28 72 measuring_device 113 114 MD_425 6 28 72 measuring_device 114 61 MD_475A_phos 6 28 72 measuring_device 61 109 Fuji_BAS1500 6 28 72 measuring_device 109 62 Fuji_FLA3000 6 28 72 measuring_device 62 63 BioRad 6 28 72 measuring_device 63 182 ScanArray3000_GSI_Lumonics 6 28 72 measuring_device 182 183 ScanArray5000_GSI_Lumonics 6 28 72 measuring_device 183 205 Axon_4000a_Axon 6 72 73 scanning_software 205 206 Fuji_Image_Reader_FLA3000_3000G_V1.0 6 72 73 scanning_software 206 207 BAS_reader_V2.26beta 6 72 73 scanning_software 207 208 Storm_scanner_control 6 72 73 scanning_software 208 209 Typhoon_scanner_control_V1.0 6 72 73 scanning_software 209 210 Scan_Array3000_V3.11_Controller_V2.03 6 72 73 scanning_software 210 184 Scan Array_V2.1 6 73 61 spacial_resolution 0 0 [microm] 6 61 62 pixelsize 0 0 [micromxmicrom] 6 62 63 PMT_setting_applicable 184 185 no(enter_0%) 6 62 63 PMT_setting_applicable 185 186 yes 6 63 64 PMT_setting 0 0 [%] 6 64 65 laser_power_setting_applicable 186 187 no(enter_0%) 6 64 65 laser_power_setting_applicable 187 64 yes 6 65 29 laser_power_setting 0 0 [%] 6 29 30 imaging_software 64 65 AIS 6 29 30 imaging_software 65 66 HDG 6 29 30 imaging_software 66 67 XDotsReader 6 29 30 imaging_software 67 68 imagene 6 29 30 imaging_software 68 188 Xdigitise 6 29 30 imaging_software 188 189 GenePixPro 6 29 30 imaging_software 189 69 QuantArray 6 30 31 background_correction 69 70 none 6 30 31 background_correction 70 71 local_background 6 30 31 background_correction 71 72 block_background 6 30 31 background_correction 72 73 empty_spots_average 6 30 31 background_correction 73 74 empty_spots_per_block 6 31 74 spot_detection 74 75 all_spots 6 31 74 spot_detection 75 76 only_positive_spots 6 74 32 spot_dimension_(diameter) 0 0 [microm] 6 32 33 spot_size 76 77 fixed 6 32 33 spot_size 77 78 variable 6 33 34 intensity_measurement 78 79 highest_value_in_spot_centre 6 33 34 intensity_measurement 79 80 sum_of_pixels_within_boundary 6 33 34 intensity_measurement 80 81 mean_of_pixels_within_boundary 7 34 35 organism 81 82 Saccharomyces_cerevisiae 7 34 35 organism 82 83 Arabidopsis_thaliana 7 34 35 organism 83 103 murine_biopsy 7 34 35 organism 103 84 murine_cell_line 7 34 35 organism 84 85 human_biopsy 7 34 35 organism 85 86 human_cell_line 7 34 35 organism 86 192 Bacillus_subtilis 7 34 35 organism 192 199 Trypanosoma_brucei 7 34 35 organism 199 87 Candida_albicans 8 35 36 date_of_entry_day 0 0 [] 8 36 37 date_of_entry_month 0 0 [] 8 37 39 date_of_entry_year 0 0 [] 8 39 3035 experimentator 104 115 bastuk 8 39 3035 experimentator 115 105 becerra 8 39 3035 experimentator 105 88 bier 8 39 3035 experimentator 88 190 boer 8 39 3035 experimentator 190 196 diehl 8 39 3035 experimentator 196 191 fischer 8 39 3035 experimentator 191 87 grahlmann 8 39 3035 experimentator 87 91 hauser 8 39 3035 experimentator 91 112 kornacker 8 39 3035 experimentator 112 107 lagorce 8 39 3035 experimentator 107 90 lombardia 8 39 3035 experimentator 90 108 lutz 8 39 3035 experimentator 108 92 meijer 8 39 3035 experimentator 92 198 mendel 8 39 3035 experimentator 198 195 reile 8 39 3035 experimentator 195 197 scheideler 8 39 3035 experimentator 197 111 schrenk 8 39 3035 experimentator 111 110 steiner 8 39 3035 experimentator 110 106 sueltmann 8 39 3035 experimentator 106 89 tournu 8 39 3035 experimentator 89 93 wilmer 8 39 3035 experimentator 93 116 wittig 8 39 3035 experimentator 116 3010 yin 9 3035 3036 ecotype 3010 3011 Landsberg_erecta 9 3035 3036 ecotype 3011 3012 Columbia_0 9 3035 3036 ecotype 3012 3013 Wassilewskija 9 3035 3036 ecotype 3013 3014 Dijon 9 3035 3036 ecotype 3014 3015 Cvi 10 3036 3037 genetic_variation 3015 3016 WT 10 3036 3037 genetic_variation 3016 3017 mutation 10 3036 3037 genetic_variation 3017 3018 ko 10 3036 3037 genetic_variation 3018 3019 overexpression 10 3036 3037 genetic_variation 3019 3098 inducible_promoter 10 3037 3038 transgene 0 0 [no_in_y1_genes] 10 3038 3039 2nd_genetic_variation 3015 3016 WT 10 3038 3039 2nd_genetic_variation 3016 3017 mutation 10 3038 3039 2nd_genetic_variation 3017 3018 ko 10 3038 3039 2nd_genetic_variation 3018 3019 overexpression 10 3038 3039 2nd_genetic_variation 3019 3098 inducible_promoter 10 3039 3040 2nd_transgene 0 0 [no_in_y1_genes] 10 3040 3041 3rd_genetic_variation 3015 3016 WT 10 3040 3041 3rd_genetic_variation 3016 3017 mutation 10 3040 3041 3rd_genetic_variation 3017 3018 ko 10 3040 3041 3rd_genetic_variation 3018 3019 overexpression 10 3040 3041 3rd_genetic_variation 3019 3098 inducible_promoter 10 3041 3042 3rd_transgene 0 0 [no_in_y1_genes] 10 3042 3043 4th_genetic_variation 3015 3016 WT 10 3042 3043 4th_genetic_variation 3016 3017 mutation 10 3042 3043 4th_genetic_variation 3017 3018 ko 10 3042 3043 4th_genetic_variation 3018 3019 overexpression 10 3042 3043 4th_genetic_variation 3019 3098 inducible_promoter 10 3043 3044 4th_transgene 0 0 [no_in_y1_genes] 10 3044 3045 5th_genetic_variation 3015 3016 WT 10 3044 3045 5th_genetic_variation 3016 3017 mutation 10 3044 3045 5th_genetic_variation 3017 3018 ko 10 3044 3045 5th_genetic_variation 3018 3019 overexpression 10 3044 3045 5th_genetic_variation 3019 3098 inducible_promoter 10 3045 3113 5th_transgene 0 0 [no_in_y1_genes] 11 3113 3107 active_transposon 3098 3091 no_transposon 12 3107 3052 experimentator_growth_conditions 3091 3032 schlaich 13 3052 3053 begin_after_germination 0 0 [d] 13 3053 3054 end_after_germination 0 0 [d] 13 3054 3055 soil 3032 3033 loamy 13 3054 3055 soil 3033 3092 sandy 14 3055 3056 begin_after_germination 0 0 [d] 14 3056 3057 end_after_germination 0 0 [d] 14 3057 3058 soil 0 0 [%] 14 3058 3059 sand 0 0 [%] 14 3059 3060 compost 0 0 [%] 14 3060 3061 perlite 0 0 [%] 14 3061 3062 vermiculite 0 0 [%] 15 3062 3063 begin_after_germination 0 0 [d] 15 3063 3108 end_after_germination 0 0 [d] 15 3108 3109 light_per_day 0 0 [h] 15 3109 3110 light_intensity 0 0 [mol/m2/s PAR] 15 3110 3111 light_source 3092 3093 bulb 15 3110 3111 light_source 3093 3094 neon 15 3110 3111 light_source 3094 3036 no_phytochamber_used 15 3111 3112 day_temperature 0 0 [deg.C] 15 3112 3065 night_temperature 0 0 [deg.C] 16 3065 3066 begin_after_germination 0 0 [d] 16 3066 3067 end_after_germination 0 0 [d] 16 3067 3068 culture 3036 3037 solid 16 3067 3068 culture 3037 3038 liquid 16 3067 3068 culture 3038 3096 cell_suspension 16 3067 3068 culture 3096 3039 no_in_vitro_culture 16 3068 3069 light 3039 3040 autophototroph 16 3068 3069 light 3040 3097 heterotroph 16 3068 3069 light 3097 3041 no_in_vitro_culture 16 3069 3070 saccharose 0 0 [mM] 16 3070 3072 vitamine_B5 0 0 [mM] 16 3072 3073 light_per_day 0 0 [h] 16 3073 3074 light_intensity 0 0 [mol/m2/s PAR] 16 3074 3075 light_source 3041 3042 bulb 16 3074 3075 light_source 3042 3095 neon 16 3074 3075 light_source 3095 3090 no_in_vitro_culture 16 3075 3076 day_temperature 0 0 [deg.C] 16 3076 3106 night_temperature 0 0 [deg.C] 17 3106 3077 experimentator_treatment_and_sampling 3090 3043 schlaich 18 3077 3078 wounding_type 3043 3044 not_applicated 18 3077 3078 wounding_type 3044 3045 incision 18 3077 3078 wounding_type 3045 3046 hole 18 3078 3079 wounding_where 3046 3047 not_applicated 18 3078 3079 wounding_where 3047 3048 leaves 18 3078 3079 wounding_where 3048 3049 roots 18 3079 3080 wounding_amount 0 0 [mm] 19 3080 3081 IAA_delivery 3049 3050 not_applicated 19 3080 3081 IAA_delivery 3050 3051 on_leaves 19 3080 3081 IAA_delivery 3051 3052 in_atmosphere 19 3080 3081 IAA_delivery 3052 3053 spray 19 3080 3081 IAA_delivery 3053 3054 root_level 19 3080 3081 IAA_delivery 3054 3055 injection 19 3080 3081 IAA_delivery 3055 3056 in_culture_medium 19 3081 3082 IAA_period_begin_after_germination 0 0 [d] 19 3082 3083 IAA_period_duration 0 0 [d] 19 3083 3084 IAA_periodicity 3056 3057 continous 19 3083 3084 IAA_periodicity 3057 3058 1x_per_day 19 3084 3091 IAA_application_begin_after_dawn 0 0 [h] 19 3091 3085 IAA_concentration 0 0 [mM] 19 3085 3086 2_4_D_delivery 3058 3059 not_applicated 19 3085 3086 2_4_D_delivery 3059 3060 on_leaves 19 3085 3086 2_4_D_delivery 3060 3061 in_atmosphere 19 3085 3086 2_4_D_delivery 3061 3062 spray 19 3085 3086 2_4_D_delivery 3062 3063 root_level 19 3085 3086 2_4_D_delivery 3063 3064 injection 19 3085 3086 2_4_D_delivery 3064 3065 in_culture_medium 19 3086 3087 2_4_D_period_begin_after_germination 0 0 [d] 19 3087 3088 2_4_D_period_duration 0 0 [d] 19 3088 3089 2_4_D_periodicity 3065 3066 continous 19 3088 3089 2_4_D_periodicity 3066 3067 1x_per_day 19 3089 3090 2_4_D_application_begin_after_dawn 0 0 [h] 19 3090 3092 2_4_D_concentration 0 0 [mM] 20 3092 3093 benzyladenine_delivery 3067 3068 not_applicated 20 3092 3093 benzyladenine_delivery 3068 3069 on_leaves 20 3092 3093 benzyladenine_delivery 3069 3070 in_atmosphere 20 3092 3093 benzyladenine_delivery 3070 3071 spray 20 3092 3093 benzyladenine_delivery 3071 3072 root_level 20 3092 3093 benzyladenine_delivery 3072 3073 injection 20 3092 3093 benzyladenine_delivery 3073 3074 in_culture_medium 20 3093 3094 benzyladenine_period_begin_after_germination 0 0 [d] 20 3094 3095 benzyladenine_period_duration 0 0 [d] 20 3095 3096 benzyladenine_periodicity 3074 3075 continous 20 3095 3096 benzyladenine_periodicity 3075 3076 1x_per_day 20 3096 3097 benzyladenine_application_begin_after_dawn 0 0 [h] 20 3097 3098 benzyladenine_concentration 0 0 [mM] 21 3098 3099 bacteria_application_preparation 3076 3077 water_sprayed_1h_before 21 3098 3099 bacteria_application_preparation 3077 3078 not_prepared 21 3098 3099 bacteria_application_preparation 3078 3079 no_bacteria_applied 21 3099 3100 bacteria_application 3079 3080 twothird_of_abaxial_leaf_surface_inoculated 21 3099 3100 bacteria_application 3080 3081 no_bacteria_applied 21 3100 3101 bacteria 3081 3082 pseudomonas_syringae_pv_tomato_virulent 21 3100 3101 bacteria 3082 3083 pseudomonas_syringae_pv_tomato_avirulent 21 3100 3101 bacteria 3083 3084 no_bacteria_applied 21 3101 3102 bacteria_titer 0 0 [cfu_per_ml] 22 3102 3103 after_germination 0 0 [d] 22 3103 3104 after_dawn 0 0 [h] 22 3104 3105 exact_timepoint_after_treatment 0 0 [min] 23 3105 -1 organ 3084 3085 leaf 23 3105 -1 organ 3085 3086 root 23 3105 -1 organ 3086 3087 flower 23 3105 -1 organ 3087 3088 silique 23 3105 -1 organ 3088 3089 stem 23 3105 -1 organ 3089 -1 complete_plant