log. reg. 2, nhauser: deltaPDE2_cc (e.g. result 24)

condition-dependent annotations:

control

81 - A260_A280_ratio
94 - CCD_camera_exposure_times
7035 - strain
7037 - genetic_variation
7076 - morphology
7078 - temperaturedeg.C

condition 1

81 - A260_A280_ratio
94 - CCD_camera_exposure_times
7035 - strain
7037 - genetic_variation
7076 - morphology
7078 - temperaturedeg.C

condition 2

81 - A260_A280_ratio
94 - CCD_camera_exposure_times
7035 - strain
7037 - genetic_variation
7076 - morphology
7078 - temperaturedeg.C

condition 3

81 - A260_A280_ratio
94 - CCD_camera_exposure_times
7035 - strain
7037 - genetic_variation
7076 - morphology
7078 - temperaturedeg.C

measurement-dependent annotations:

control

measurement 1 #71

3 - array_individual

measurement 2 #72

3 - array_individual

condition 1

measurement 3 #73

3 - array_individual

measurement 4 #74

3 - array_individual

condition 2

measurement 5 #79

3 - array_individual

measurement 6 #80

3 - array_individual

condition 3

measurement 7 #81

3 - array_individual

measurement 8 #82

3 - array_individual

constant annotations (unchanged throughout the MCE):

common_annotations

array

1 - array_source
2 - array_series
3 - array_individual *** measurement - dependent ***
4 - array_support
67 - array_support_widthmm
68 - array_support_lengthmm
41 - array_surface_chemistry
42 - support_manufacturer
92 - Eppendorf_support_brand
43 - Hybond_support_brand
44 - Pall_support_brand
45 - Corning_support_brand
46 - TeleChem_support_brand
79 - Quantifoil_support_brand
109 - Nexterion_support_brand
5 - spotted_material
69 - spotted_material_property
70 - number_of_elements_on_array_(without_duplicates)
80 - external_controls_spotted
71 - elements_spotted_as
47 - spotted_material_purification
48 - spotting_buffer
49 - spotting_robot
50 - spotting_pins
51 - relative_humidity
52 - relative_humidity%
53 - temperature
54 - temperaturedeg.C
55 - postprocessing
77 - uv_crosslink_applicable
78 - uv_crosslink_energyx100microJpercm2
6 - readfile
7 - array_hybridisation

hybridisation

RNA_preparation

8 - material_source
110 - ribosomal_RNA
9 - preparation_of_total_RNA
98 - DNAse_digest
81 - A260_A280_ratio *** condition - dependent ***
10 - preparation_of_PolyA+

labeling

11 - amount_of_RNAmicrogram
40 - amount_of_cDNAmicrogram
108 - amount_of_DNAmicrogram
12 - enzyme
13 - priming
14 - nucleotide
56 - nucleotide_removal
15 - label
66 - days_from_calibration_date_applicable
38 - days_from_calibration_dated
16 - label_incorporation_rate%
17 - total_activitycpm

hybridisation_conditions

18 - buffer
57 - prehybridization_without_target
82 - pre_hyb_temperaturedeg.C
83 - pre_hyb_lengthmin
19 - competitors
75 - hybridisation_device
76 - hybridisation_instrument
20 - hybridisation_tempdeg.C
21 - buffer_volumeml
58 - coverslip_used
59 - coverslip_sizemmxmm
84 - coverslip_material
85 - coverslip_provider
86 - coverslip_spacer_thickness_(0_for_none)mm
87 - spikes_included
22 - hybridisation_lengthh

stringency_wash

23 - wash_buffer
24 - times
25 - wash_lengthmin
26 - temperaturedeg.C
88 - drying

detection

96 - days_from_washing_applicable
97 - days_from_washingd
60 - exposure_time_applicable
27 - exposure_timeh
28 - measuring_device
72 - scanning_software
73 - spacial_resolutionmicrom
61 - pixelsizemicromxmicrom
62 - PMT_setting_applicable
63 - PMT_setting%
64 - laser_power_setting_applicable
65 - laser_power_setting%
93 - CCD_camera_setting_applicable
94 - CCD_camera_exposure_time *** condition - dependent ***
95 - pixel_binning
29 - imaging_software
30 - background_correction
31 - spot_detection
74 - spot_dimension_(diameter)microm
32 - spot_size
33 - intensity_measurement
99 - overall_image_quality
100 - color_comparison_applicable
101 - color_comparison
102 - background_stars_abundance
103 - background_stars_occupied_area
104 - background_smere_intensity
105 - background_smere_occupied_area
106 - background_high_intensity_artifacts_(funny_pictures)
107 - background_dust_abundance

sample

34 - organism

submission

35 - date_of_entry_day
36 - date_of_entry_month
37 - date_of_entry_year
39 - experimentator_hybridization_and_washing
89 - experimentator_spotting
90 - experimentator_RNA_isolation
91 - experimentator_labeling

organism_specific_annotations

genotype

7035 - strain *** condition - dependent ***
7036 - mating_type

genetic_specification

7037 - genetic_variation *** condition - dependent ***
7038 - transgeneno_in_assembly19_orf19.XXXX
7056 - 2nd_genetic_variation
7057 - 2nd_transgeneno_in_assembly19_orf19.XXXX
7058 - 3rd_genetic_variation
7059 - 3rd_transgeneno_in_assembly19_orf19.XXXX
7060 - 4th_genetic_variation
7061 - 4th_transgeneno_in_assembly19_orf19.XXXX
7062 - 5th_genetic_variation
7063 - 5th_transgeneno_in_assembly19_orf19.XXXX

resistance_marker

7039 - leucine
7040 - uracil
7041 - tryptophan
7042 - histidine
7043 - lysine
7044 - adenine
7068 - arginine
7069 - MPA_(mycophenolic_acid)

pre_culture

7066 - culture
7045 - growth_phase
7070 - morphology
7071 - life_cycle_status
7046 - temperaturedeg.C
7064 - pH_(enter_0_if_unknown)
7047 - energy_metabolism
7072 - light_periods
7073 - medium_base

C_source

7049 - glucose%
7050 - galactose%
7051 - ethanol%
7052 - glycerol%
7065 - sucrose%
7067 - lactate%

main_culture

7074 - culture
7075 - growth_phase
7076 - morphology *** condition - dependent ***
7099 - adherence
7077 - life_cycle_status
7078 - temperature *** condition - dependent ***
7079 - pH_(enter_0_if_unknown)
7080 - energy_metabolism

medium

7081 - base

C_source

7082 - glucose%
7083 - galactose%
7084 - ethanol%
7085 - glycerol%
7086 - sucrose%
7087 - lactate%

additive

7088 - temporary_additive
7089 - concentrationmM

growth_condition_shift

7100 - incubation_periodmin
7090 - incubation_period_with_additivemin
7091 - incubation_period_after_temperature_shiftmin
7092 - incubation_period_after_ph_shiftmin
7093 - incubation_period_after_medium_shiftmin
7094 - incubation_period_after_C_source_shiftmin

lighting_conditions

7095 - first_period
7096 - first_period_durationh
7097 - second_period
7098 - second_period_durationh