HUMAN CANCER BIOPSY annotation definitions ------------------------------------------ 1-4-2005 Common annotations were compiled by Nicole Hauser, Judith Boer, Rosa Arribas, Frank Diehl, and others; Organism specific part by Judith Boer and Andrea Bauer and others. heading1no heading1 heading2no heading2 heading3no heading3 1 common_annotations 1 array 1 - 1 common_annotations 2 hybridisation 2 RNA_preparation 1 common_annotations 2 hybridisation 3 labeling 1 common_annotations 2 hybridisation 4 hybridisation_conditions 1 common_annotations 2 hybridisation 5 stringency_wash 1 common_annotations 2 hybridisation 6 detection 1 common_annotations 3 sample 7 - 1 common_annotations 4 submission 8 - 2 organism_specific_annotations 5 sample_id 9 - 2 organism_specific_annotations 5 sample_id 10 cell_culture_(see_e.g._ATCC) 2 organism_specific_annotations 6 patient_info 11 patient_characteristics_(some_also_relevant_for_cell_line_origin) 2 organism_specific_annotations 6 patient_info 12 patient_status 2 organism_specific_annotations 7 tumor_info 13 tumor_general_(also_relevant_for_cell_line_origin) 2 organism_specific_annotations 7 tumor_info 14 tumor_tnm_(also_for_cell_lines_of_well-known_origin) 2 organism_specific_annotations 7 tumor_info 15 tumor_site_(also_for_cell_lines_of_well-known_origin) 2 organism_specific_annotations 7 tumor_info 16 tumor_invasion_(also_for_cell_lines_of_very_well-known_origin) 2 organism_specific_annotations 7 tumor_info 17 tumor_stage_and_histology_(also_for_cell_lines_of_well-known_origin) 2 organism_specific_annotations 7 tumor_info 18 percentage_normal 2 organism_specific_annotations 8 cytogenetics 19 cytogenetics_(also_for_current_status_of_cell_line) lastheadingno ano nextano annotation vno nextvno value 1 1 2 array_source 10 11 self_made 1 1 2 array_source 11 12 genome_systems 1 1 2 array_source 12 13 clontech 1 1 2 array_source 13 14 research_genetics 1 2 3 array_series 0 0 [] 1 3 4 array_individual 0 0 [] 1 4 67 array_support 14 15 nylon 1 4 67 array_support 15 16 polypropylene 1 4 67 array_support 16 117 glass 1 67 68 array_support_width 0 0 [mm] 1 68 41 array_support_length 0 0 [mm] 1 41 42 array_surface_chemistry 117 118 unknown_positive_charge 1 41 42 array_surface_chemistry 118 119 poly_L_lysine 1 41 42 array_surface_chemistry 119 120 aldehyde 1 41 42 array_surface_chemistry 120 395 aminosilane 1 41 42 array_surface_chemistry 395 121 epoxy 1 42 92 support_manufacturer 121 122 Hybond 1 42 92 support_manufacturer 122 123 Pall 1 42 92 support_manufacturer 123 124 TeleChem 1 42 92 support_manufacturer 124 250 Corning 1 42 92 support_manufacturer 250 511 Quantifoil 1 42 92 support_manufacturer 511 125 Nexterion 1 42 92 support_manufacturer 125 126 diehl 1 42 92 support_manufacturer 126 396 stephan 1 42 92 support_manufacturer 396 397 Eppendorf 1 42 92 support_manufacturer 397 398 teifel 1 42 92 support_manufacturer 398 399 loukachova 1 92 43 Eppendorf_support_brand 399 400 non_Eppendorf 1 92 43 Eppendorf_support_brand 400 401 Creative_Oligo 1 92 43 Eppendorf_support_brand 401 127 Creative_PCR 1 43 44 Hybond_support_brand 127 128 non_Hybond 1 43 44 Hybond_support_brand 128 129 N+ 1 44 45 Pall_support_brand 129 130 non_Pall 1 44 45 Pall_support_brand 130 223 Biodyne_B 1 44 45 Pall_support_brand 223 131 polypropylene 1 45 46 Corning_support_brand 131 132 non_Corning 1 45 46 Corning_support_brand 132 133 CMT_GAPS 1 46 79 TeleChem_support_brand 133 134 non_TeleChem 1 46 79 TeleChem_support_brand 134 135 Aldehyde 1 46 79 TeleChem_support_brand 135 251 SuperAldehyde 1 79 109 Quantifoil_support_brand 251 252 non_Quantifoil 1 79 109 Quantifoil_support_brand 252 253 QMT_Amino 1 79 109 Quantifoil_support_brand 253 254 QMT_Aldehyd 1 79 109 Quantifoil_support_brand 254 512 QMT_Epoxy 1 109 5 Nexterion_support_brand 512 513 non_Nexterion 1 109 5 Nexterion_support_brand 513 514 Nexterion_A 1 109 5 Nexterion_support_brand 514 515 Nexterion_Aplus 1 109 5 Nexterion_support_brand 515 516 Nexterion_E 1 109 5 Nexterion_support_brand 516 517 Nexterion_AL 1 109 5 Nexterion_support_brand 517 518 Nexterion_H 1 109 5 Nexterion_support_brand 518 17 Nexterion_MPX 1 5 69 spotted_material 17 236 PCR 1 5 69 spotted_material 236 18 cDNA 1 5 69 spotted_material 18 263 spotted_bacteria 1 5 69 spotted_material 263 19 isolated_plasmids 1 5 69 spotted_material 19 402 DNA-oligo 1 5 69 spotted_material 402 403 DNA-oligo50_MWG 1 5 69 spotted_material 403 20 DNA-oligo70_Operon 1 5 69 spotted_material 20 200 PNA-oligo 1 69 70 spotted_material_property 200 201 single_stranded 1 69 70 spotted_material_property 201 269 double_stranded 1 70 80 number_of_elements_on_array_(without_duplicates) 0 0 [] 1 80 71 external_controls_spotted 269 270 no 1 80 71 external_controls_spotted 270 202 yes 1 71 47 elements_spotted_as 202 203 single 1 71 47 elements_spotted_as 203 204 duplicate 1 71 47 elements_spotted_as 204 404 triplicate 1 71 47 elements_spotted_as 404 136 quadruplicate 1 47 48 spotted_material_purification 136 137 non 1 47 48 spotted_material_purification 137 138 isopropanol_precipitation 1 47 48 spotted_material_purification 138 139 QIAquick 1 47 48 spotted_material_purification 139 405 Multiscreen_NU_Millipore 1 47 48 spotted_material_purification 405 140 NucleoFast96_MN_centrifuge 1 48 49 spotting_buffer 140 141 1.5M_NaCl_0.5M_NaOH 1 48 49 spotting_buffer 141 142 28mM_EDC_4.4volpromill_NMI 1 48 49 spotting_buffer 142 143 spottingsolution_by_diehl 1 48 49 spotting_buffer 143 144 MicroSpotting_solution_TeleChem 1 48 49 spotting_buffer 144 145 3xSSC 1 48 49 spotting_buffer 145 406 3xSSC_50%DMSO 1 48 49 spotting_buffer 406 407 3xSSC_1.5M_Betaine 1 48 49 spotting_buffer 407 255 2xSSC_1M_Betaine_200mM_sodiumphosphate_pH7.2 1 48 49 spotting_buffer 255 528 3xSSC_1.5M_Betaine_150mM_sodiumphosphate_pH8.5 1 48 49 spotting_buffer 528 227 3xSSC_3M_Betaine_150mM_sodiumphosphate_pH8.5 1 48 49 spotting_buffer 227 228 150mM_sodiumphosphate_pH8.5 1 48 49 spotting_buffer 228 533 150mM_sodiumphosphate_pH8.5_0.01%SDS 1 48 49 spotting_buffer 533 146 3M_Betaine_in_PCR_Buffer 1 49 50 spotting_robot 146 147 SDDC-2_ESI 1 49 50 spotting_robot 147 148 Biogrid_Biorobotics 1 49 50 spotting_robot 148 149 Microgrid_II_Biorobotics 1 49 50 spotting_robot 149 150 Omnigrid_Genemachines 1 49 50 spotting_robot 150 151 QArray_Genetix 1 50 51 spotting_pins 151 152 solid 1 50 51 spotting_pins 152 153 SMP-3_Telechem 1 50 51 spotting_pins 153 154 Biogrid_Biorobotics 1 51 52 relative_humidity 154 155 defined 1 51 52 relative_humidity 155 156 estimated 1 51 52 relative_humidity 156 157 unknown(enter_0%) 1 52 53 relative_humidity 0 0 [%] 1 53 54 temperature 157 158 defined 1 53 54 temperature 158 159 estimated 1 53 54 temperature 159 160 unknown(enter_0deg.C) 1 54 55 temperature 0 0 [deg.C] 1 55 77 postprocessing 160 264 neutralizing_by_1.5MNaCL_0.5MTrispH7.5_1mMEDTA 1 55 77 postprocessing 264 161 neutralizing_by_0.3MNaCL_20mMNaH2PO4_2mMEDTA 1 55 77 postprocessing 161 408 2h_at_65deg.C 1 55 77 postprocessing 408 257 2h_at_80deg.C 1 55 77 postprocessing 257 409 4h_at_80deg.C 1 55 77 postprocessing 409 410 30min_at_120deg.C 1 55 77 postprocessing 410 411 60min_at_120deg.C 1 55 77 postprocessing 411 412 15min_humidChamber_RT 1 55 77 postprocessing 412 162 30min_humidChamber_RT 1 55 77 postprocessing 162 163 succinic_anhydride_Stanford_protocol 1 55 77 postprocessing 163 164 succinic_anhydride_protocol_by_diehl 1 55 77 postprocessing 164 165 BSA_Tigr_protocol 1 55 77 postprocessing 165 256 NaBH4_Telechem_protocol 1 55 77 postprocessing 256 224 Quantifoil_protocol 1 77 78 uv_crosslink_applicable 224 225 no(enter_0) 1 77 78 uv_crosslink_applicable 225 21 yes 1 78 6 uv_crosslink_energy 0 0 [x100microJpercm2] 1 6 7 readfile 0 0 [] 1 7 8 array_hybridisation 0 0 [] 2 8 110 material_source 21 22 fresh 2 8 110 material_source 22 23 frozen 2 8 110 material_source 23 94 RNA_later 2 8 110 material_source 94 502 cDNA_subtraction 2 8 110 material_source 502 522 DNA_from_ChIP_(chromatine_immuno_precipitation) 2 110 9 ribosomal_RNA 522 523 no_enrichment 2 110 9 ribosomal_RNA 523 24 spinning_down_ribosomes 2 9 98 preparation_of_total_RNA 24 25 trizol 2 9 98 preparation_of_total_RNA 25 26 columns 2 9 98 preparation_of_total_RNA 26 237 phenol 2 9 98 preparation_of_total_RNA 237 238 trizol+columns 2 9 98 preparation_of_total_RNA 238 95 phenol+columns 2 9 98 preparation_of_total_RNA 95 455 not_applicable 2 98 81 DNAse_digest 455 456 no 2 98 81 DNAse_digest 456 457 yes 2 98 81 DNAse_digest 457 27 unknown 2 81 10 A260_A280_ratio 0 0 [] 2 10 11 preparation_of_PolyA+ 27 28 none 2 10 11 preparation_of_PolyA+ 28 29 dynabeads 2 10 11 preparation_of_PolyA+ 29 30 oligotex 2 10 11 preparation_of_PolyA+ 30 96 cellulose 2 10 11 preparation_of_PolyA+ 96 31 not_applicable 3 11 40 amount_of_RNA 0 0 [microgram] 3 40 108 amount_of_cDNA 0 0 [microgram] 3 108 12 amount_of_DNA 0 0 [microgram] 3 12 13 enzyme 31 32 superscript 3 12 13 enzyme 32 413 AMV 3 12 13 enzyme 413 414 FluoroScript_Invitrogen 3 12 13 enzyme 414 33 LabelStar_qiagen 3 12 13 enzyme 33 166 M-MLV 3 12 13 enzyme 166 97 OmniScript 3 12 13 enzyme 97 34 klenow 3 13 14 priming 34 35 oligo_dT 3 13 14 priming 35 36 anchored_oligo_dT 3 13 14 priming 36 503 random_hexamer 3 13 14 priming 503 37 random_octamer 3 13 14 priming 37 98 combined_oligo_dT-random_hexamer 3 13 14 priming 98 239 pcr_select 3 13 14 priming 239 240 ClonTech_specific1 3 13 14 priming 240 519 ClonTech_specific2 3 13 14 priming 519 38 gene_specific_primer_mix 3 14 56 nucleotide 38 39 dCTP 3 14 56 nucleotide 39 167 dATP 3 14 56 nucleotide 167 168 aa-dUTP 3 14 56 nucleotide 168 169 dUTP 3 56 15 nucleotide_removal 169 170 G50_Pharmacia 3 56 15 nucleotide_removal 170 226 ammium_acetate_isopropanol_precipitation 3 56 15 nucleotide_removal 226 171 Na_acetate_isopropanol_precipitation 3 56 15 nucleotide_removal 171 172 QIAquick_Qiagen 3 56 15 nucleotide_removal 172 415 GFX_columns_Pharmacia 3 56 15 nucleotide_removal 415 416 columns_FluoroScriptKit_Invitrogen 3 56 15 nucleotide_removal 416 173 columns_LabelStarKit_qiagen 3 56 15 nucleotide_removal 173 40 YM30_Amicon 3 15 66 label 40 41 33P 3 15 66 label 41 42 32P 3 15 66 label 42 43 Cy3 3 15 66 label 43 417 Cy5 3 15 66 label 417 418 Dy555 3 15 66 label 418 174 Dy630 3 15 66 label 174 175 Alexa488 3 15 66 label 175 193 Alexa594 3 66 38 days_from_calibration_date_applicable 193 194 yes 3 66 38 days_from_calibration_date_applicable 194 44 no(enter_0d) 3 38 16 days_from_calibration_date 0 0 [d] 3 16 17 label_incorporation_rate 0 0 [%] 3 17 18 total_activity 0 0 [cpm] 4 18 57 buffer 44 229 0.5M_Na_phosphate_pH7.2_7%_SDS 4 18 57 buffer 229 230 5x_SSC_0.1%_SDS 4 18 57 buffer 230 231 Genisphere3DNA 4 18 57 buffer 231 419 Genisphere3DNAformamide 4 18 57 buffer 419 232 4x_SSC_0.1%_SDS 4 18 57 buffer 232 45 3x_SSC_2.5x_denhardts_0.08%_SDS 4 18 57 buffer 45 46 5x_SSC_5x_denhardts_0.5%_SDS 4 18 57 buffer 46 47 4x_SSC_7.2%_Na_sarcosyl 4 18 57 buffer 47 48 Clontech_Express_hyb 4 18 57 buffer 48 258 ambion_Northern_max 4 18 57 buffer 258 420 ambion_slidehyb1 4 18 57 buffer 420 221 QMT_hybridisation_buffer 4 18 57 buffer 221 176 3x_SSC_5x_denhardts_1%_SDS_5%_dextransulfate_50%_formamide 4 57 82 prehybridization_without_target 176 177 no 4 57 82 prehybridization_without_target 177 49 yes 4 82 83 pre_hyb_temperature 0 0 [deg.C] 4 83 19 pre_hyb_length 0 0 [min] 4 19 75 competitors 49 50 none 4 19 75 competitors 50 51 tRNA 4 19 75 competitors 51 217 Cot1 4 19 75 competitors 217 52 dA20 4 19 75 competitors 52 53 dA40 4 19 75 competitors 53 241 salmon_sperm 4 19 75 competitors 241 421 Cot1_salmonsperm 4 19 75 competitors 421 99 polydA_humanCot1 4 19 75 competitors 99 100 dA40_Cot1_salmonsperm 4 19 75 competitors 100 101 dA40_Cot1_tRNA_salmonsperm 4 19 75 competitors 101 102 dA40_Cot1_specificoligos_salmonsperm 4 19 75 competitors 102 211 dA40_Cot1_specificoligos_tRNA_salmonsperm 4 75 76 hybridisation_device 211 212 water_bath 4 75 76 hybridisation_device 212 213 rotating_oven 4 76 20 hybridisation_instrument 213 271 hybridisation_bottle 4 76 20 hybridisation_instrument 271 422 hybridization_chamber_ArrayIt 4 76 20 hybridisation_instrument 422 214 hybridization_chamber_ArrayIt_equivalent_red 4 76 20 hybridisation_instrument 214 215 hybridisation_chamber_corning 4 76 20 hybridisation_instrument 215 216 hybridisation_chamber_TeleChem 4 76 20 hybridisation_instrument 216 178 hybridisation_chamber_ClonTech 4 20 21 hybridisation_temp 0 0 [deg.C] 4 21 58 buffer_volume 0 0 [ml] 4 58 59 coverslip_used 178 179 no_(enter_size_0) 4 58 59 coverslip_used 179 272 yes 4 59 84 coverslip_size 0 0 [mmxmm] 4 84 85 coverslip_material 272 273 glass 4 84 85 coverslip_material 273 274 plastic 4 85 86 coverslip_provider 274 275 Metzler 4 85 86 coverslip_provider 275 276 Sigma 4 85 86 coverslip_provider 276 277 Roth 4 85 86 coverslip_provider 277 278 Erie_Scientific 4 86 87 coverslip_spacer_thickness_(0_for_none) 0 0 [mm] 4 87 22 spikes_included 278 279 no 4 87 22 spikes_included 279 54 yes 4 22 23 hybridisation_length 0 0 [h] 5 23 24 wash_buffer 54 55 0.1xSSC_0.1%SDS 5 23 24 wash_buffer 55 56 0.6xSSC_1%SDS 5 23 24 wash_buffer 56 222 0.2xSSC_0.1%SDS 5 23 24 wash_buffer 222 233 0.2xSSC 5 23 24 wash_buffer 233 234 0.1xSSC 5 23 24 wash_buffer 234 259 0.06xSSC 5 23 24 wash_buffer 259 57 2xSSC_0.2%SDS 5 23 24 wash_buffer 57 242 40mMNaPipH7_0.1%SDS 5 23 24 wash_buffer 242 423 ClonTech_protocol 5 23 24 wash_buffer 423 280 Corning_protocol 5 24 25 times 0 0 [] 5 25 26 wash_length 0 0 [min] 5 26 88 temperature 0 0 [deg.C] 5 88 96 drying 280 281 centrifuge_10_min_500_rpm 5 88 96 drying 281 454 nitrogen 5 88 96 drying 454 450 air_pressure 6 96 97 days_from_washing_applicable 450 451 yes 6 96 97 days_from_washing_applicable 451 180 no_(enter_-1) 6 97 60 days_from_washing 0 0 [d] 6 60 27 exposure_time_applicable 180 181 yes 6 60 27 exposure_time_applicable 181 58 no_(enter_0h) 6 27 28 exposure_time 0 0 [h] 6 28 72 measuring_device 58 59 MD_storm860_phos 6 28 72 measuring_device 59 60 MD_storm860_red 6 28 72 measuring_device 60 113 MD_storm860_blue 6 28 72 measuring_device 113 114 MD_425 6 28 72 measuring_device 114 265 MD_475A_phos 6 28 72 measuring_device 265 61 MD_typhoon_phos 6 28 72 measuring_device 61 109 Fuji_BAS1500 6 28 72 measuring_device 109 62 Fuji_FLA3000 6 28 72 measuring_device 62 63 BioRad 6 28 72 measuring_device 63 182 ScanArray3000_GSI_Lumonics 6 28 72 measuring_device 182 424 ScanArray5000_GSI_Lumonics 6 28 72 measuring_device 424 183 ArrayWorX_AppliedPrecision 6 28 72 measuring_device 183 205 Axon_4000a_Axon 6 72 73 scanning_software 205 243 Fuji_Image_Reader_FLA3000_3000G_V1.0 6 72 73 scanning_software 243 206 BAS_reader_V2.11 6 72 73 scanning_software 206 207 BAS_reader_V2.26beta 6 72 73 scanning_software 207 208 Storm_scanner_control 6 72 73 scanning_software 208 209 Typhoon_scanner_control_V1.0 6 72 73 scanning_software 209 210 Scan_Array3000_V3.11_Controller_V2.03 6 72 73 scanning_software 210 425 Scan_Array_V2.1 6 72 73 scanning_software 425 184 ArrayWorX 6 73 61 spacial_resolution 0 0 [microm] 6 61 62 pixelsize 0 0 [micromxmicrom] 6 62 63 PMT_setting_applicable 184 185 no(enter_0%) 6 62 63 PMT_setting_applicable 185 186 yes 6 63 64 PMT_setting 0 0 [%] 6 64 65 laser_power_setting_applicable 186 187 no(enter_0%) 6 64 65 laser_power_setting_applicable 187 426 yes 6 65 93 laser_power_setting 0 0 [%] 6 93 94 CCD_camera_setting_applicable 426 427 no(enter_0s) 6 93 94 CCD_camera_setting_applicable 427 428 yes 6 94 95 CCD_camera_exposure_time 0 0 [s] 6 95 29 pixel_binning 428 429 no_binning 6 95 29 pixel_binning 429 430 high_dynamic_range 6 95 29 pixel_binning 430 431 high_precision 6 95 29 pixel_binning 431 64 high_SNR 6 29 30 imaging_software 64 244 AIS 6 29 30 imaging_software 244 432 AIDA_Image_Analyzer_V3.0 6 29 30 imaging_software 432 520 AIDA_Image_Analyzer_V3.25 6 29 30 imaging_software 520 521 AIDA_Image_Analyzer_V3.35 6 29 30 imaging_software 521 65 AIDA_Image_Analyzer_V4 6 29 30 imaging_software 65 66 HDG 6 29 30 imaging_software 66 67 XDotsReader 6 29 30 imaging_software 67 68 imagene 6 29 30 imaging_software 68 188 Xdigitise 6 29 30 imaging_software 188 268 GenePixPro_V3.0.6.89 6 29 30 imaging_software 268 452 GenePixPro_V4.0.0.54 6 29 30 imaging_software 452 189 GenePixPro_V4.1 6 29 30 imaging_software 189 69 QuantArray 6 30 31 background_correction 69 70 none 6 30 31 background_correction 70 71 local_background 6 30 31 background_correction 71 72 block_background 6 30 31 background_correction 72 73 empty_spots_average 6 30 31 background_correction 73 433 empty_spots_per_block 6 30 31 background_correction 433 74 global_background 6 31 74 spot_detection 74 75 all_spots 6 31 74 spot_detection 75 76 only_positive_spots 6 74 32 spot_dimension_(diameter) 0 0 [microm] 6 32 33 spot_size 76 77 fixed 6 32 33 spot_size 77 78 variable 6 33 99 intensity_measurement 78 79 highest_value_in_spot_centre 6 33 99 intensity_measurement 79 80 sum_of_pixels_within_boundary 6 33 99 intensity_measurement 80 282 mean_of_pixels_times_no_of_pixels_within_boundary 6 33 99 intensity_measurement 282 458 median_of_pixels_times_no_of_pixels_within_boundary 6 99 100 overall_image_quality 458 459 1-perfect 6 99 100 overall_image_quality 459 460 2 6 99 100 overall_image_quality 460 461 3 6 99 100 overall_image_quality 461 462 4 6 99 100 overall_image_quality 462 463 5-bad 6 100 101 color_comparison_applicable 463 464 yes 6 100 101 color_comparison_applicable 464 465 no 6 101 102 color_comparison 465 466 Cy3_much_lower_than_Cy5 6 101 102 color_comparison 466 467 Cy3_lower_than_Cy5 6 101 102 color_comparison 467 468 Cy3_similar_to_Cy5 6 101 102 color_comparison 468 469 Cy3_higher_than_Cy5 6 101 102 color_comparison 469 470 Cy3_much_higher_than_Cy5 6 102 103 background_stars_abundance 470 471 1-no_stars 6 102 103 background_stars_abundance 471 472 2 6 102 103 background_stars_abundance 472 473 3 6 102 103 background_stars_abundance 473 474 4 6 102 103 background_stars_abundance 474 475 5-many_stars 6 103 104 background_stars_occupied_area 475 476 1-limited_to_small_area 6 103 104 background_stars_occupied_area 476 477 2 6 103 104 background_stars_occupied_area 477 478 3 6 103 104 background_stars_occupied_area 478 479 4 6 103 104 background_stars_occupied_area 479 480 5-all_over_chip 6 104 105 background_smere_intensity 480 481 1-none 6 104 105 background_smere_intensity 481 482 2 6 104 105 background_smere_intensity 482 483 3 6 104 105 background_smere_intensity 483 484 4 6 104 105 background_smere_intensity 484 485 5-strong 6 105 106 background_smere_occupied_area 485 486 1-limited_to_small_area 6 105 106 background_smere_occupied_area 486 487 2 6 105 106 background_smere_occupied_area 487 488 3 6 105 106 background_smere_occupied_area 488 489 4 6 105 106 background_smere_occupied_area 489 490 5-all_over_chip 6 106 107 background_high_intensity_artifacts_(funny_pictures) 490 491 1-limited_to_small_area 6 106 107 background_high_intensity_artifacts_(funny_pictures) 491 492 2 6 106 107 background_high_intensity_artifacts_(funny_pictures) 492 493 3 6 106 107 background_high_intensity_artifacts_(funny_pictures) 493 494 4 6 106 107 background_high_intensity_artifacts_(funny_pictures) 494 495 5-all_over_chip 6 107 34 background_dust_abundance 495 496 1-no_dust 6 107 34 background_dust_abundance 496 497 2 6 107 34 background_dust_abundance 497 498 3 6 107 34 background_dust_abundance 498 499 4 6 107 34 background_dust_abundance 499 81 5-many_dust_particles 7 34 35 organism 81 82 Saccharomyces_cerevisiae 7 34 35 organism 82 83 Arabidopsis_thaliana 7 34 35 organism 83 103 murine_biopsy 7 34 35 organism 103 245 murine_cell_line 7 34 35 organism 245 246 rat_biopsy 7 34 35 organism 246 84 rat_cell_line 7 34 35 organism 84 85 human_biopsy 7 34 35 organism 85 86 human_cell_line 7 34 35 organism 86 192 Bacillus_subtilis 7 34 35 organism 192 534 Trypanosoma_brucei 7 34 35 organism 534 535 Trypanosoma_equiperdum 7 34 35 organism 535 199 Trypanosoma_evansi 7 34 35 organism 199 220 Candida_albicans 7 34 35 organism 220 260 Neurospora_crassa 7 34 35 organism 260 266 Drosophila_melanogaster 7 34 35 organism 266 283 Antirrhinum_majus 7 34 35 organism 283 284 Pseudomonas_putida 7 34 35 organism 284 285 Pseudomonas_aeruginosa 7 34 35 organism 285 218 Pseudomonas_fluorescens 8 35 36 date_of_entry_day 0 0 [] 8 36 37 date_of_entry_month 0 0 [] 8 37 39 date_of_entry_year 0 0 [] 8 39 89 experimentator_hybridization_and_washing 218 104 aign 8 39 89 experimentator_hybridization_and_washing 104 235 bastuk 8 39 89 experimentator_hybridization_and_washing 235 115 bauer 8 39 89 experimentator_hybridization_and_washing 115 261 becerra 8 39 89 experimentator_hybridization_and_washing 261 267 beckmann 8 39 89 experimentator_hybridization_and_washing 267 105 bey 8 39 89 experimentator_hybridization_and_washing 105 387 bier 8 39 89 experimentator_hybridization_and_washing 387 88 boehm 8 39 89 experimentator_hybridization_and_washing 88 248 boer 8 39 89 experimentator_hybridization_and_washing 248 524 bosse 8 39 89 experimentator_hybridization_and_washing 524 446 brems 8 39 89 experimentator_hybridization_and_washing 446 190 busch 8 39 89 experimentator_hybridization_and_washing 190 196 diehl 8 39 89 experimentator_hybridization_and_washing 196 191 fischer 8 39 89 experimentator_hybridization_and_washing 191 219 grahlmann 8 39 89 experimentator_hybridization_and_washing 219 247 grees 8 39 89 experimentator_hybridization_and_washing 247 87 hasenpuschtheil 8 39 89 experimentator_hybridization_and_washing 87 391 hauser 8 39 89 experimentator_hybridization_and_washing 391 436 klopp 8 39 89 experimentator_hybridization_and_washing 436 91 konrad 8 39 89 experimentator_hybridization_and_washing 91 249 kornacker 8 39 89 experimentator_hybridization_and_washing 249 112 kuery 8 39 89 experimentator_hybridization_and_washing 112 107 lagorce 8 39 89 experimentator_hybridization_and_washing 107 434 lombardia 8 39 89 experimentator_hybridization_and_washing 434 90 loukachova 8 39 89 experimentator_hybridization_and_washing 90 108 lutz 8 39 89 experimentator_hybridization_and_washing 108 92 meijer 8 39 89 experimentator_hybridization_and_washing 92 504 mendel 8 39 89 experimentator_hybridization_and_washing 504 198 radke 8 39 89 experimentator_hybridization_and_washing 198 195 reile 8 39 89 experimentator_hybridization_and_washing 195 197 scheideler 8 39 89 experimentator_hybridization_and_washing 197 111 schrenk 8 39 89 experimentator_hybridization_and_washing 111 286 steiner 8 39 89 experimentator_hybridization_and_washing 286 110 stjepandic 8 39 89 experimentator_hybridization_and_washing 110 435 sueltmann 8 39 89 experimentator_hybridization_and_washing 435 106 teifel 8 39 89 experimentator_hybridization_and_washing 106 262 tournu 8 39 89 experimentator_hybridization_and_washing 262 89 werdermann 8 39 89 experimentator_hybridization_and_washing 89 93 wilmer 8 39 89 experimentator_hybridization_and_washing 93 532 wittig 8 39 89 experimentator_hybridization_and_washing 532 116 xu 8 39 89 experimentator_hybridization_and_washing 116 505 yin 8 39 89 experimentator_hybridization_and_washing 505 287 zelt 8 89 90 experimentator_spotting 287 288 aign 8 89 90 experimentator_spotting 288 289 bastuk 8 89 90 experimentator_spotting 289 290 bauer 8 89 90 experimentator_spotting 290 291 becerra 8 89 90 experimentator_spotting 291 292 beckmann 8 89 90 experimentator_spotting 292 293 bey 8 89 90 experimentator_spotting 293 388 bier 8 89 90 experimentator_spotting 388 294 boehm 8 89 90 experimentator_spotting 294 295 boer 8 89 90 experimentator_spotting 295 525 bosse 8 89 90 experimentator_spotting 525 447 brems 8 89 90 experimentator_spotting 447 296 busch 8 89 90 experimentator_spotting 296 297 diehl 8 89 90 experimentator_spotting 297 298 fischer 8 89 90 experimentator_spotting 298 299 grahlmann 8 89 90 experimentator_spotting 299 300 grees 8 89 90 experimentator_spotting 300 301 hasenpuschtheil 8 89 90 experimentator_spotting 301 392 hauser 8 89 90 experimentator_spotting 392 438 klopp 8 89 90 experimentator_spotting 438 302 konrad 8 89 90 experimentator_spotting 302 303 kornacker 8 89 90 experimentator_spotting 303 304 kuery 8 89 90 experimentator_spotting 304 305 lagorce 8 89 90 experimentator_spotting 305 437 lombardia 8 89 90 experimentator_spotting 437 306 loukachova 8 89 90 experimentator_spotting 306 307 lutz 8 89 90 experimentator_spotting 307 308 meijer 8 89 90 experimentator_spotting 308 506 mendel 8 89 90 experimentator_spotting 506 309 radke 8 89 90 experimentator_spotting 309 310 reile 8 89 90 experimentator_spotting 310 311 scheideler 8 89 90 experimentator_spotting 311 312 schrenk 8 89 90 experimentator_spotting 312 313 steiner 8 89 90 experimentator_spotting 313 314 stjepandic 8 89 90 experimentator_spotting 314 439 sueltmann 8 89 90 experimentator_spotting 439 315 teifel 8 89 90 experimentator_spotting 315 316 tournu 8 89 90 experimentator_spotting 316 317 werdermann 8 89 90 experimentator_spotting 317 501 wilmer 8 89 90 experimentator_spotting 501 318 witt 8 89 90 experimentator_spotting 318 531 wittig 8 89 90 experimentator_spotting 531 319 xu 8 89 90 experimentator_spotting 319 320 yin 8 89 90 experimentator_spotting 320 321 zelt 8 90 91 experimentator_RNA_isolation 321 322 aign 8 90 91 experimentator_RNA_isolation 322 323 bastuk 8 90 91 experimentator_RNA_isolation 323 324 bauer 8 90 91 experimentator_RNA_isolation 324 325 becerra 8 90 91 experimentator_RNA_isolation 325 326 beckmann 8 90 91 experimentator_RNA_isolation 326 327 bey 8 90 91 experimentator_RNA_isolation 327 389 bier 8 90 91 experimentator_RNA_isolation 389 328 boehm 8 90 91 experimentator_RNA_isolation 328 329 boer 8 90 91 experimentator_RNA_isolation 329 526 bosse 8 90 91 experimentator_RNA_isolation 526 448 brenndoerfer 8 90 91 experimentator_RNA_isolation 448 330 busch 8 90 91 experimentator_RNA_isolation 330 331 diehl 8 90 91 experimentator_RNA_isolation 331 332 fischer 8 90 91 experimentator_RNA_isolation 332 333 grahlmann 8 90 91 experimentator_RNA_isolation 333 334 grees 8 90 91 experimentator_RNA_isolation 334 335 hasenpuschtheil 8 90 91 experimentator_RNA_isolation 335 393 hauser 8 90 91 experimentator_RNA_isolation 393 530 heinfried 8 90 91 experimentator_RNA_isolation 530 442 klopp 8 90 91 experimentator_RNA_isolation 442 336 konrad 8 90 91 experimentator_RNA_isolation 336 337 kornacker 8 90 91 experimentator_RNA_isolation 337 338 kuery 8 90 91 experimentator_RNA_isolation 338 339 lagorce 8 90 91 experimentator_RNA_isolation 339 440 lombardia 8 90 91 experimentator_RNA_isolation 440 340 loukachova 8 90 91 experimentator_RNA_isolation 340 341 lutz 8 90 91 experimentator_RNA_isolation 341 342 meijer 8 90 91 experimentator_RNA_isolation 342 507 mendel 8 90 91 experimentator_RNA_isolation 507 343 radke 8 90 91 experimentator_RNA_isolation 343 344 reile 8 90 91 experimentator_RNA_isolation 344 345 scheideler 8 90 91 experimentator_RNA_isolation 345 346 schrenk 8 90 91 experimentator_RNA_isolation 346 347 steiner 8 90 91 experimentator_RNA_isolation 347 348 stjepandic 8 90 91 experimentator_RNA_isolation 348 441 sueltmann 8 90 91 experimentator_RNA_isolation 441 349 teifel 8 90 91 experimentator_RNA_isolation 349 350 tournu 8 90 91 experimentator_RNA_isolation 350 351 werdermann 8 90 91 experimentator_RNA_isolation 351 453 wilmer 8 90 91 experimentator_RNA_isolation 453 500 wirtz 8 90 91 experimentator_RNA_isolation 500 352 witt 8 90 91 experimentator_RNA_isolation 352 353 wittig 8 90 91 experimentator_RNA_isolation 353 508 yin 8 90 91 experimentator_RNA_isolation 508 354 zelt 8 91 2110 experimentator_labeling 354 355 aign 8 91 2110 experimentator_labeling 355 356 bastuk 8 91 2110 experimentator_labeling 356 357 bauer 8 91 2110 experimentator_labeling 357 358 becerra 8 91 2110 experimentator_labeling 358 359 beckmann 8 91 2110 experimentator_labeling 359 360 bey 8 91 2110 experimentator_labeling 360 390 bier 8 91 2110 experimentator_labeling 390 361 boehm 8 91 2110 experimentator_labeling 361 362 boer 8 91 2110 experimentator_labeling 362 527 bosse 8 91 2110 experimentator_labeling 527 449 brems 8 91 2110 experimentator_labeling 449 363 busch 8 91 2110 experimentator_labeling 363 364 diehl 8 91 2110 experimentator_labeling 364 365 fischer 8 91 2110 experimentator_labeling 365 366 grahlmann 8 91 2110 experimentator_labeling 366 367 grees 8 91 2110 experimentator_labeling 367 368 hasenpuschtheil 8 91 2110 experimentator_labeling 368 394 hauser 8 91 2110 experimentator_labeling 394 444 klopp 8 91 2110 experimentator_labeling 444 369 konrad 8 91 2110 experimentator_labeling 369 370 kornacker 8 91 2110 experimentator_labeling 370 371 kuery 8 91 2110 experimentator_labeling 371 372 lagorce 8 91 2110 experimentator_labeling 372 443 lombardia 8 91 2110 experimentator_labeling 443 373 loukachova 8 91 2110 experimentator_labeling 373 374 lutz 8 91 2110 experimentator_labeling 374 375 meijer 8 91 2110 experimentator_labeling 375 509 mendel 8 91 2110 experimentator_labeling 509 376 radke 8 91 2110 experimentator_labeling 376 377 reile 8 91 2110 experimentator_labeling 377 378 scheideler 8 91 2110 experimentator_labeling 378 379 schrenk 8 91 2110 experimentator_labeling 379 380 steiner 8 91 2110 experimentator_labeling 380 381 stjepandic 8 91 2110 experimentator_labeling 381 445 sueltmann 8 91 2110 experimentator_labeling 445 382 teifel 8 91 2110 experimentator_labeling 382 383 tournu 8 91 2110 experimentator_labeling 383 384 werdermann 8 91 2110 experimentator_labeling 384 385 wilmer 8 91 2110 experimentator_labeling 385 529 wittig 8 91 2110 experimentator_labeling 529 386 xu 8 91 2110 experimentator_labeling 386 510 yin 8 91 2110 experimentator_labeling 510 2140 zelt 9 2110 2107 hybridisation_length_2nd_filter 0 0 [h] 9 2107 2108 total_activity_2nd_filter 0 0 [cpm] 9 2108 2109 exposure_time_2nd_filter 0 0 [h] 9 2109 2105 array_individual_2nd_filter 0 0 [] 9 2105 2106 array_hybridisation_2nd_filter 0 0 [] 9 2106 2057 label_incorporation_rate_2nd_filter 0 0 [%] 9 2057 2058 cancer_express_id 0 0 [] 9 2058 2059 sample_date_day 0 0 [] 9 2059 2060 sample_date_month 0 0 [] 9 2060 2061 sample_date_year 0 0 [] 9 2061 2062 institute 2140 2141 georg_august_university 9 2061 2062 institute 2141 2436 duke_university_medical_center 9 2061 2062 institute 2436 2142 klinikum_heidelberg 9 2061 2062 institute 2142 2337 klinikum_mannheim 9 2061 2062 institute 2337 2408 klinikum_ulm 9 2061 2062 institute 2408 2143 robert_bosch_krankenhause_stuttgart 9 2061 2062 institute 2143 2144 unknown 9 2062 2063 institute_sample_id_firstpart 0 0 [] 9 2063 2064 institute_sample_id_secondpart 0 0 [] 9 2064 2065 physician 2144 2145 jakse 9 2064 2065 physician 2145 2331 sturm 9 2064 2065 physician 2331 2146 ringert 9 2064 2065 physician 2146 2445 unknown 9 2065 2111 pathologist 2445 2147 esposito 9 2065 2111 pathologist 2147 2148 fuezesi 9 2065 2111 pathologist 2148 2149 lindenberger 9 2065 2111 pathologist 2149 2444 riggins 9 2065 2111 pathologist 2444 2343 zimmerman 9 2065 2111 pathologist 2343 2344 unknown 10 2111 2112 experimentator 2344 2345 not_applicable 10 2111 2112 experimentator 2345 2346 bauer 10 2111 2112 experimentator 2346 2452 bier 10 2111 2112 experimentator 2452 2347 witt 10 2112 2138 cell_line 2347 2354 not_applicable 10 2112 2138 cell_line 2354 2348 panc1 10 2112 2138 cell_line 2348 2349 mia_paca_2 10 2112 2138 cell_line 2349 2350 capan1 10 2112 2138 cell_line 2350 2351 suit_007 10 2112 2138 cell_line 2351 2352 suit_028 10 2112 2138 cell_line 2352 2353 paTu2 10 2112 2138 cell_line 2353 2409 imimPC2 10 2112 2138 cell_line 2409 2410 MCF-7 10 2112 2138 cell_line 2410 2447 MDA-MB231 10 2112 2138 cell_line 2447 2448 pool_of_Gimen_Kelly_IMR_Midi 10 2112 2138 cell_line 2448 2449 Gimen 10 2112 2138 cell_line 2449 2450 Kelly 10 2112 2138 cell_line 2450 2451 IMR 10 2112 2138 cell_line 2451 2453 Midi 10 2138 2113 current_differentiation_grade_(may_or_may_not_differ_from_differentiation_grade_of_original_tumor(2092)) 2453 2454 X_(unknown) 10 2138 2113 current_differentiation_grade_(may_or_may_not_differ_from_differentiation_grade_of_original_tumor(2092)) 2454 2455 1 10 2138 2113 current_differentiation_grade_(may_or_may_not_differ_from_differentiation_grade_of_original_tumor(2092)) 2455 2456 2 10 2138 2113 current_differentiation_grade_(may_or_may_not_differ_from_differentiation_grade_of_original_tumor(2092)) 2456 2457 3 10 2138 2113 current_differentiation_grade_(may_or_may_not_differ_from_differentiation_grade_of_original_tumor(2092)) 2457 2413 4 10 2113 2114 treatment_cis_platin 0 0 [mM] 10 2114 2129 treatment_taxol 0 0 [mM] 10 2129 2130 treatment_TNFalpha 0 0 [mM] 10 2130 2136 treatment_ICI.182.780 0 0 [mM] 10 2136 2137 treatment_Valproate 0 0 [mM] 10 2137 2115 treatment_Cycloheximide 0 0 [mM] 10 2115 2131 timepoint_after_treatment 0 0 [h] 11 2131 2066 birth_date 2413 2414 specified 11 2131 2066 birth_date 2414 2415 unknown 11 2131 2066 birth_date 2415 2458 pooled 11 2131 2066 birth_date 2458 2150 not_applicable_(e.g._cell_line) 11 2066 2067 birth_date_day 0 0 [] 11 2067 2068 birth_date_month 0 0 [] 11 2068 2069 birth_date_year 0 0 [] 11 2069 2070 sex 2150 2151 male 11 2069 2070 sex 2151 2422 female 11 2069 2070 sex 2422 2152 pooled 11 2069 2070 sex 2152 2153 unknown_(also_for_cell_line_of_undescribed_origin) 11 2070 2116 race 2153 2154 caucasian 11 2070 2116 race 2154 2155 african 11 2070 2116 race 2155 2156 asian 11 2070 2116 race 2156 2421 other 11 2070 2116 race 2421 2157 pooled 11 2070 2116 race 2157 2355 unknown_(also_for_cell_line_of_undescribed_origin) 11 2116 2117 smoking 2355 2356 past 11 2116 2117 smoking 2356 2357 present 11 2116 2117 smoking 2357 2423 never 11 2116 2117 smoking 2423 2424 pooled 11 2116 2117 smoking 2424 2425 unknown 11 2116 2117 smoking 2425 2358 not_applicable 11 2117 2118 alcohol_consumption 2358 2359 past 11 2117 2118 alcohol_consumption 2359 2360 present 11 2117 2118 alcohol_consumption 2360 2412 never 11 2117 2118 alcohol_consumption 2412 2434 pooled 11 2117 2118 alcohol_consumption 2434 2435 unknown 11 2117 2118 alcohol_consumption 2435 2361 not_applicable 11 2118 2119 Diabetes_mellitus 2361 2459 none(no_finding/results_negative) 11 2118 2119 Diabetes_mellitus 2459 2362 not_applicable_(e.g._cell_line) 11 2118 2119 Diabetes_mellitus 2362 2363 latent_less_than_1_year 11 2118 2119 Diabetes_mellitus 2363 2364 latent_more_than_1_year 11 2118 2119 Diabetes_mellitus 2364 2365 manifest_less_than_1_year 11 2118 2119 Diabetes_mellitus 2365 2366 manifest_less_than_1_year 11 2119 2120 jaundice 2366 2460 none(no_finding/results_negative) 11 2119 2120 jaundice 2460 2367 not_applicable_(e.g._cell_line) 11 2119 2120 jaundice 2367 2368 yes 11 2119 2120 jaundice 2368 2369 unknown 11 2120 2121 pain 2369 2370 no 11 2120 2121 pain 2370 2371 moderate 11 2120 2121 pain 2371 2372 severe 11 2120 2121 pain 2372 2417 unknown 11 2120 2121 pain 2417 2373 not_applicable 11 2121 2122 weight_loss 2373 2374 no 11 2121 2122 weight_loss 2374 2375 yes 11 2121 2122 weight_loss 2375 2430 unknown 11 2121 2122 weight_loss 2430 2376 not_applicable 11 2122 2123 weight_loss_in_last_4_weeks 0 0 [kg] 11 2123 2124 pancreatitis_in_history 2376 2377 none(no_finding/results_negative) 11 2123 2124 pancreatitis_in_history 2377 2378 yes 11 2123 2124 pancreatitis_in_history 2378 2418 unknown 11 2123 2124 pancreatitis_in_history 2418 2379 not_applicable 11 2124 2125 CA_19_9 0 0 [units] 11 2125 2133 OP_procedure 2379 2411 Whipple 11 2125 2133 OP_procedure 2411 2461 none(no_finding/results_negative) 11 2125 2133 OP_procedure 2461 2380 not_applicable_(e.g._cell_line) 11 2125 2133 OP_procedure 2380 2381 pp_Whipple 11 2125 2133 OP_procedure 2381 2382 DPPHR 11 2125 2133 OP_procedure 2382 2383 pancreatic_left_resection 11 2125 2133 OP_procedure 2383 2384 total_pancreatectomy 11 2125 2133 OP_procedure 2384 2158 other 11 2133 2134 OP_date_day 0 0 [] 11 2134 2135 OP_date_day_month 0 0 [] 11 2135 2071 OP_date_day_year 0 0 [] 12 2071 2072 previous_malignancy 2158 2159 yes 12 2071 2072 previous_malignancy 2159 2462 none(no_finding/results_negative) 12 2071 2072 previous_malignancy 2462 2160 not_applicable_(e.g._cell_line) 12 2071 2072 previous_malignancy 2160 2161 unknown 12 2072 2132 live_status 2161 2162 alive_with_disease 12 2072 2132 live_status 2162 2163 alive_without_disease 12 2072 2132 live_status 2163 2164 died_of_disease 12 2072 2132 live_status 2164 2165 died_of_other 12 2072 2132 live_status 2165 2463 unknown 12 2072 2132 live_status 2463 2166 not_applicable_(e.g._cell_line) 12 2132 2073 survival_time(put_0_both_if_unknown_or_died_in_op) 0 0 [months] 12 2073 2074 pre_op_treatment 2166 2167 chemotherapy 12 2073 2074 pre_op_treatment 2167 2168 no_therapy 12 2073 2074 pre_op_treatment 2168 2397 radiotherapy 12 2073 2074 pre_op_treatment 2397 2169 other 12 2073 2074 pre_op_treatment 2169 2420 unknown 12 2073 2074 pre_op_treatment 2420 2170 no_tumor_resection(e.g._cell_line_or_biopsy_of_normal_tissue) 12 2074 2075 post_op_treatment 2170 2171 chemotherapy 12 2074 2075 post_op_treatment 2171 2172 no_therapy 12 2074 2075 post_op_treatment 2172 2398 radiotherapy 12 2074 2075 post_op_treatment 2398 2173 other 12 2074 2075 post_op_treatment 2173 2419 unknown 12 2074 2075 post_op_treatment 2419 2174 no_tumor_resection(e.g._cell_line_or_biopsy_of_normal_tissue) 13 2075 2076 tumor_or_normal 2174 2464 tumor 13 2075 2076 tumor_or_normal 2464 2175 cell_line 13 2075 2076 tumor_or_normal 2175 2338 normal 13 2075 2076 tumor_or_normal 2338 2176 inflammation_(non_tumor) 13 2075 2076 tumor_or_normal 2176 2177 tumor_minus_normal 13 2075 2076 tumor_or_normal 2177 2181 normal_minus_tumor 13 2076 2139 tumor 2181 2180 brain_tumor 13 2076 2139 tumor 2180 2179 colon_carcinoma 13 2076 2139 tumor 2179 2339 mamma_carcinoma 13 2076 2139 tumor 2339 2178 pancreas_carcinoma 13 2076 2139 tumor 2178 2465 renal_cell_carcinoma 13 2076 2139 tumor 2465 2466 neuroblastoma_GNB 13 2076 2139 tumor 2466 2467 neuroblastoma_poorly_diff 13 2076 2139 tumor 2467 2468 neuroblastoma_diff 13 2076 2139 tumor 2468 2340 cell_line 13 2076 2139 tumor 2340 2472 none_(normal/no_finding/results_negative) 13 2139 2077 normal 2472 2473 not_applicable_(tumor_or_cell_line) 13 2139 2077 normal 2473 2474 pancreas 13 2139 2077 normal 2474 2475 sympathetic_ganglia 13 2139 2077 normal 2475 2182 adrenal_medulla 13 2077 2078 tumor_type 2182 2183 renal_clear_cell 13 2077 2078 tumor_type 2183 2184 renal_chromophil 13 2077 2078 tumor_type 2184 2185 renal_chromophobe 13 2077 2078 tumor_type 2185 2335 renal_oncocytoma 13 2077 2078 tumor_type 2335 2186 renal_papillary 13 2077 2078 tumor_type 2186 2187 mamma_invasive_ductal 13 2077 2078 tumor_type 2187 2188 mamma_invasive_lobular 13 2077 2078 tumor_type 2188 2189 mamma_invasive_ductal_lobular 13 2077 2078 tumor_type 2189 2190 colon_unknown 13 2077 2078 tumor_type 2190 2191 rectum_unknown 13 2077 2078 tumor_type 2191 2192 brain_glial_astrocytic 13 2077 2078 tumor_type 2192 2342 brain_glial_oligodendroglial 13 2077 2078 tumor_type 2342 2403 pancreas_unknown 13 2077 2078 tumor_type 2403 2404 pancreas_ductal_adenocarcinoma 13 2077 2078 tumor_type 2404 2405 pancreas_cystadenoma 13 2077 2078 tumor_type 2405 2437 pancreas_cystadenocarcinoma 13 2077 2078 tumor_type 2437 2438 pancreas_endocrine 13 2077 2078 tumor_type 2438 2439 pancreas_serous_cystadenoma 13 2077 2078 tumor_type 2439 2440 pancreas_mucinous_cystadenoma 13 2077 2078 tumor_type 2440 2480 pancreas_mucinous_cystadenocarcinoma 13 2077 2078 tumor_type 2480 2481 pancreas_IPMC 13 2077 2078 tumor_type 2481 2406 pancreas_IPMN 13 2077 2078 tumor_type 2406 2407 pancreas_IPMT 13 2077 2078 tumor_type 2407 2479 pancreas_other 13 2077 2078 tumor_type 2479 2193 neuroblastoma 13 2077 2078 tumor_type 2193 2341 unknown_(also_for_cell_line_of_undescribed_origin) 13 2077 2078 tumor_type 2341 2194 no_tumor_(normal/no_finding/results_negative) 14 2078 2079 pT_stage 2194 2195 X_(also_for_cell_line_of_undescribed_origin) 14 2078 2079 pT_stage 2195 2196 0 14 2078 2079 pT_stage 2196 2197 is 14 2078 2079 pT_stage 2197 2198 1 14 2078 2079 pT_stage 2198 2199 1a 14 2078 2079 pT_stage 2199 2200 1b 14 2078 2079 pT_stage 2200 2201 1c 14 2078 2079 pT_stage 2201 2202 2 14 2078 2079 pT_stage 2202 2203 3 14 2078 2079 pT_stage 2203 2204 3a 14 2078 2079 pT_stage 2204 2205 3b 14 2078 2079 pT_stage 2205 2206 3c 14 2078 2079 pT_stage 2206 2207 4 14 2078 2079 pT_stage 2207 2208 4a 14 2078 2079 pT_stage 2208 2209 4b 14 2078 2079 pT_stage 2209 2248 4c 14 2078 2079 pT_stage 2248 2210 4d 14 2079 2080 pN_stage 2210 2211 X_(also_for_cell_line_of_undescribed_origin) 14 2079 2080 pN_stage 2211 2212 0 14 2079 2080 pN_stage 2212 2213 1 14 2079 2080 pN_stage 2213 2214 1a 14 2079 2080 pN_stage 2214 2215 1b 14 2079 2080 pN_stage 2215 2216 2 14 2080 2081 pM_stage 2216 2217 X_(also_for_cell_line_of_undescribed_origin) 14 2080 2081 pM_stage 2217 2218 0 14 2080 2081 pM_stage 2218 2313 1 14 2081 2082 metastasis_location 2313 2416 not_applicable 14 2081 2082 metastasis_location 2416 2314 none(no_finding/results_negative) 14 2081 2082 metastasis_location 2314 2315 unknown 14 2081 2082 metastasis_location 2315 2316 lung 14 2081 2082 metastasis_location 2316 2317 bone 14 2081 2082 metastasis_location 2317 2318 liver 14 2081 2082 metastasis_location 2318 2319 brain 14 2081 2082 metastasis_location 2319 2320 lymphnodes 14 2081 2082 metastasis_location 2320 2321 bonemarrow 14 2081 2082 metastasis_location 2321 2322 pleura 14 2081 2082 metastasis_location 2322 2323 peritoneum 14 2081 2082 metastasis_location 2323 2324 adrenal_glands 14 2081 2082 metastasis_location 2324 2325 skin 14 2081 2082 metastasis_location 2325 2326 pancreas 14 2081 2082 metastasis_location 2326 2219 other 15 2082 2083 tumor_site 2219 2220 kidney 15 2082 2083 tumor_site 2220 2221 breast 15 2082 2083 tumor_site 2221 2222 colon 15 2082 2083 tumor_site 2222 2223 rectum 15 2082 2083 tumor_site 2223 2224 brain 15 2082 2083 tumor_site 2224 2225 liver 15 2082 2083 tumor_site 2225 2336 lung 15 2082 2083 tumor_site 2336 2226 pancreas 15 2082 2083 tumor_site 2226 2428 other 15 2082 2083 tumor_site 2428 2469 no_tumor(no_finding/results_negative) 15 2082 2083 tumor_site 2469 2227 unknown_(also_for_cell_line_of_undescribed_origin) 15 2083 2084 tumor_subregion 2227 2429 unknown_(also_for_cell_line_of_undescribed_origin) 15 2083 2084 tumor_subregion 2429 2228 no_tumor(no_finding/results_negative) 15 2083 2084 tumor_subregion 2228 2229 kidney_unknown 15 2083 2084 tumor_subregion 2229 2230 breast_mamille_C50.0 15 2083 2084 tumor_subregion 2230 2231 breast_central_C50.1 15 2083 2084 tumor_subregion 2231 2232 breast_inside_top_quadrant_C50.2 15 2083 2084 tumor_subregion 2232 2233 breast_inside_bottom_quadrant_C50.3 15 2083 2084 tumor_subregion 2233 2234 breast_outside_top_quadrant_C50.4 15 2083 2084 tumor_subregion 2234 2235 breast_outside_bottom_quadrant_C50.5 15 2083 2084 tumor_subregion 2235 2236 breast_axillary_C50.6 15 2083 2084 tumor_subregion 2236 2237 breast_unknown 15 2083 2084 tumor_subregion 2237 2238 colon_unknown 15 2083 2084 tumor_subregion 2238 2239 rectum_unknown 15 2083 2084 tumor_subregion 2239 2240 brain_Q06_B09 15 2083 2084 tumor_subregion 2240 2241 brain_Q11_B06 15 2083 2084 tumor_subregion 2241 2242 brain_Q12_B01 15 2083 2084 tumor_subregion 2242 2243 brain_Q12_B09 15 2083 2084 tumor_subregion 2243 2244 brain_Q12_B08 15 2083 2084 tumor_subregion 2244 2399 brain_unknown 15 2083 2084 tumor_subregion 2399 2400 pancreas_head 15 2083 2084 tumor_subregion 2400 2401 pancreas_body 15 2083 2084 tumor_subregion 2401 2402 pancreas_tail 15 2083 2084 tumor_subregion 2402 2245 pancreas_papilla 15 2084 2085 tumor_size 0 0 [cm] 16 2085 2086 lymphnodes_removed 0 0 [] 16 2086 2087 lymphnodes_invaded 0 0 [] 16 2087 2088 lymphvenes_invaded 2245 2246 X_(also_for_cell_line_of_undescribed_origin) 16 2087 2088 lymphvenes_invaded 2246 2247 0 16 2087 2088 lymphvenes_invaded 2247 2249 1 16 2088 2089 vascular_invasion 2249 2250 X_(also_for_cell_line_of_undescribed_origin) 16 2088 2089 vascular_invasion 2250 2251 0 16 2088 2089 vascular_invasion 2251 2252 1 16 2088 2089 vascular_invasion 2252 2253 2 16 2089 2090 resection_status 2253 2254 X_(also_for_cell_line_of_undescribed_origin) 16 2089 2090 resection_status 2254 2255 0 16 2089 2090 resection_status 2255 2256 1 16 2089 2090 resection_status 2256 2257 2 16 2089 2090 resection_status 2257 2258 3 16 2089 2090 resection_status 2258 2432 4 16 2089 2090 resection_status 2432 2259 no_tumor_resection(e.g._cell_line_or_biopsy_of_normal_tissue) 17 2090 2091 WHO_stage 2259 2260 0 17 2090 2091 WHO_stage 2260 2261 I 17 2090 2091 WHO_stage 2261 2327 II 17 2090 2091 WHO_stage 2327 2328 IIA 17 2090 2091 WHO_stage 2328 2262 IIB 17 2090 2091 WHO_stage 2262 2329 III 17 2090 2091 WHO_stage 2329 2330 IIIA 17 2090 2091 WHO_stage 2330 2263 IIIB 17 2090 2091 WHO_stage 2263 2332 IV 17 2090 2091 WHO_stage 2332 2264 not_applicable 17 2091 2126 Duke_stage 2264 2265 A 17 2091 2126 Duke_stage 2265 2266 B 17 2091 2126 Duke_stage 2266 2333 C 17 2091 2126 Duke_stage 2333 2334 D 17 2091 2126 Duke_stage 2334 2470 no_colon_carcinoma_(also_for_cell_line_of_other_origin) 17 2091 2126 Duke_stage 2470 2385 unknown_(also_for_cell_line_of_undescribed_origin) 17 2126 2127 stroma 2385 2386 0 17 2126 2127 stroma 2386 2387 1 17 2126 2127 stroma 2387 2388 2 17 2126 2127 stroma 2388 2426 3 17 2126 2127 stroma 2426 2427 no_tumor(no_finding/results_negative) 17 2126 2127 stroma 2427 2441 pooled 17 2126 2127 stroma 2441 2389 unknown 17 2127 2128 necrosis 2389 2390 0 17 2127 2128 necrosis 2390 2391 1 17 2127 2128 necrosis 2391 2392 2 17 2127 2128 necrosis 2392 2442 3 17 2127 2128 necrosis 2442 2471 unknown 17 2127 2128 necrosis 2471 2393 not_applicable_(e.g._cell_line) 17 2128 2092 granulocytes 2393 2394 0 17 2128 2092 granulocytes 2394 2395 1 17 2128 2092 granulocytes 2395 2396 2 17 2128 2092 granulocytes 2396 2443 3 17 2128 2092 granulocytes 2443 2476 unknown 17 2128 2092 granulocytes 2476 2267 not_applicable_(e.g._cell_line) 17 2092 2093 differentiation_grade_(of_tumor_biopsy_or_original_tumor_in_case_of_cell_line) 2267 2268 X_(also_for_cell_line_of_undescribed_origin) 17 2092 2093 differentiation_grade_(of_tumor_biopsy_or_original_tumor_in_case_of_cell_line) 2268 2269 1 17 2092 2093 differentiation_grade_(of_tumor_biopsy_or_original_tumor_in_case_of_cell_line) 2269 2270 2 17 2092 2093 differentiation_grade_(of_tumor_biopsy_or_original_tumor_in_case_of_cell_line) 2270 2271 3 17 2092 2093 differentiation_grade_(of_tumor_biopsy_or_original_tumor_in_case_of_cell_line) 2271 2431 4 17 2092 2093 differentiation_grade_(of_tumor_biopsy_or_original_tumor_in_case_of_cell_line) 2431 2272 no_tumor(no_finding/results_negative) 18 2093 2094 percentage_normal 2272 2273 <5% 18 2093 2094 percentage_normal 2273 2274 5-25% 18 2093 2094 percentage_normal 2274 2275 25-50% 18 2093 2094 percentage_normal 2275 2276 50-75% 18 2093 2094 percentage_normal 2276 2277 75-95% 18 2093 2094 percentage_normal 2277 2278 >95% 18 2093 2094 percentage_normal 2278 2433 unknown 18 2093 2094 percentage_normal 2433 2478 no_tumor(no_finding/results_negative) 18 2093 2094 percentage_normal 2478 2279 not_applicable_(e.g._cell_line) 19 2094 2095 modal_number 0 0 [] 19 2095 2096 aberration_type 2279 2280 deletion 19 2095 2096 aberration_type 2280 2281 duplication 19 2095 2096 aberration_type 2281 2282 inversion 19 2095 2096 aberration_type 2282 2283 translocation 19 2095 2096 aberration_type 2283 2446 none 19 2095 2096 aberration_type 2446 2284 not_tested_(put_following_annotations_to_zero/not_applicable) 19 2096 2097 aberration_breakpoint_chromosome 0 0 [] 19 2097 2098 aberration_breakpoint_arm 2284 2285 p 19 2097 2098 aberration_breakpoint_arm 2285 2286 q 19 2097 2098 aberration_breakpoint_arm 2286 2287 not_applicable 19 2098 2099 aberration_breakpoint_subregion 0 0 [] 19 2099 2100 aberration_gain_chromosome 0 0 [] 19 2100 2101 aberration_gain_arm 2287 2288 p 19 2100 2101 aberration_gain_arm 2288 2289 q 19 2100 2101 aberration_gain_arm 2289 2290 not_applicable 19 2101 2102 aberration_gain_subregion 0 0 [] 19 2102 2103 aberration_loss_chromosome 0 0 [] 19 2103 2104 aberration_loss_arm 2290 2291 p 19 2103 2104 aberration_loss_arm 2291 2292 q 19 2103 2104 aberration_loss_arm 2292 -1 not_applicable 19 2104 -1 aberration_loss_subregion 0 0 []