QUANTITATIVE MASS SPECTROMETRY annotation definitions ----------------------------------------------------- 3-30-2011 Annotations were compiled by Hannes Hahne (no compliance with any standard). heading1no heading1 heading2no heading2 heading3no heading3 1 Cell_biology 1 sample 1 - 1 - 2 Biochemistry 2 Separation 2 Separation_technique 2 - 2 Biochemistry 3 Purification 3 Purification_method 3 - 2 Biochemistry 4 Labeling 4 - 4 - 3 Mass_spectrometry 5 LC_MS_instrumentation 5 - 5 - 3 Mass_spectrometry 6 Liquid_chromatography 6 General_settings 6 - 3 Mass_spectrometry 6 Liquid_chromatography 7 Gradient 7 - 3 Mass_spectrometry 6 Liquid_chromatography 8 MALDI_spotting 8 - 3 Mass_spectrometry 7 Mass_spectrometer 9 Thermo_LTQ_Orbitrap_ETD_XL 9 ESI_source 3 Mass_spectrometry 7 Mass_spectrometer 9 Thermo_LTQ_Orbitrap_ETD_XL 10 Tune_settings 3 Mass_spectrometry 7 Mass_spectrometer 9 Thermo_LTQ_Orbitrap_ETD_XL 11 MS1 3 Mass_spectrometry 7 Mass_spectrometer 9 Thermo_LTQ_Orbitrap_ETD_XL 12 MS2 3 Mass_spectrometry 7 Mass_spectrometer 9 Thermo_LTQ_Orbitrap_ETD_XL 13 MS3 3 Mass_spectrometry 8 Peak_list_generation 10 Mascot_Distiller 14 MS_processing 3 Mass_spectrometry 8 Peak_list_generation 10 Mascot_Distiller 15 MSMS_processing 3 Mass_spectrometry 8 Peak_list_generation 10 Mascot_Distiller 16 Time_domain 3 Mass_spectrometry 8 Peak_list_generation 10 Mascot_Distiller 17 MS_peak_picking 3 Mass_spectrometry 8 Peak_list_generation 10 Mascot_Distiller 18 MSMS_peak_picking 3 Mass_spectrometry 9 Search engine 11 Mascot 19 - lastheadingno ano nextano annotation vno nextvno value 1 1 2 Organism 10 11 homo_sapiens 1 1 2 Organism 11 12 mus_musculus 1 1 2 Organism 12 13 rattus_norwegicus 1 1 2 Organism 13 14 sus_scrota 1 1 2 Organism 14 15 bos_taurus 1 2 3 human_cell_line 15 16 not_applicable 1 2 3 human_cell_line 16 17 K562 1 2 3 human_cell_line 17 18 H292 1 3 4 mouse_cell_line 18 19 not_applicable 2 4 5 Chromatography 19 20 Strong_cation_exchange 2 4 5 Chromatography 20 21 Strong_anion_exchange 2 4 5 Chromatography 21 22 Isoelectric_focusing 2 4 5 Chromatography 22 23 Weak_cation_exchange 2 4 5 Chromatography 23 24 Weak 2 4 5 Chromatography 24 25 Capillary_electrophoresis 3 5 6 Immunoprecipitation 25 26 Protein 3 5 6 Immunoprecipitation 26 27 Peptide 3 6 7 Tagged_protein 27 28 GST 3 6 7 Tagged_protein 28 29 FLAG 3 6 7 Tagged_protein 29 30 Myc 3 6 7 Tagged_protein 30 31 His 3 6 7 Tagged_protein 31 32 TAP 4 7 8 Labeling 32 33 Dimethylation_of_Lys_residues_and_N-term 4 7 8 Labeling 33 34 tandem_mass_tags 4 7 8 Labeling 34 35 stable_isotope_labeling_with_amino_acids_in_cell_culture 4 7 8 Labeling 35 36 isobaric_tag_for_relative_and_absolute_quantitation 4 7 8 Labeling 36 37 O18_labeling 4 7 8 Labeling 37 38 metabolic_labeling 4 7 8 Labeling 38 39 isotope-coded_affinity_tag 4 7 8 Labeling 39 40 isotope-coded_protein_label 4 7 8 Labeling 40 41 absolute_quantification_of_proteins 5 8 9 LC_model 41 42 Eksigent 5 8 9 LC_model 42 43 Proxeon_easy_nLC 5 8 9 LC_model 43 44 Dionex_U3000 5 9 10 MS_model 44 45 Thermo_LTQ_Orbitrap_XL 5 9 10 MS_model 45 46 Bruker_Ultraflex 5 9 10 MS_model 46 47 Bruker_Amazon 5 10 11 LC_software_name 47 48 Chromeleon 5 10 11 LC_software_name 48 49 Eksigent 5 10 11 LC_software_name 49 50 Proxeon 5 11 12 LC_software_version 50 51 1.0.0 5 12 13 MS_software_name 51 52 XCalibur 5 12 13 MS_software_name 52 53 HyStar 5 13 14 LC_software_version 53 54 1.0.0 6 14 15 column_setup 54 55 no_trap 6 14 15 column_setup 55 56 vented_column 6 14 15 column_setup 56 57 conventional_setup 6 15 16 trap_colum 57 58 not_applicable 6 15 16 trap_colum 58 59 in_house-packed 6 15 16 trap_colum 59 60 DrMaisch_3um_1cm_C18RP 6 15 16 trap_colum 60 61 Kusters_BestTrapColumn 6 16 17 analytical_colum 61 62 in_house_packed 6 16 17 analytical_colum 62 63 Kusters_BestSepColumn 6 17 18 loading_buffer 63 64 0.1%_formic_acid 6 17 18 loading_buffer 64 65 0.5%_TFA 6 18 19 mobile_phase_A 65 66 0.1%_formic_acid 6 18 19 mobile_phase_A 66 67 0.5%_TFA 6 19 20 mobile_phase_B 67 68 0.1%_formic_acid_90%_acetonitrile 6 19 20 mobile_phase_B 68 69 0.5%_TFA_90%_acetonitrile 6 20 21 column_temperature 0 0 [deg_C] 6 21 22 injection_volume 0 0 [microl/min] 7 22 23 loading_flow_rate 0 0 [microl/min] 7 23 24 loading_time 0 0 [min] 7 24 25 gradient_flow_rate 0 0 [nl/min] 7 25 26 gradient_length 0 0 [min] 7 26 27 gradient_step1 69 70 applicable 7 26 27 gradient_step1 70 71 not_applicable 7 27 28 gradient_step1_time 0 0 [min] 7 28 29 gradient_step1_%B 0 0 [%] 7 29 30 gradient_step2 71 72 applicable 7 29 30 gradient_step2 72 73 not_applicable 7 30 31 gradient_step2_time 0 0 [min] 7 31 32 gradient_step2_%B 0 0 [%] 7 32 33 gradient_step3 73 74 applicable 7 32 33 gradient_step3 74 75 not_applicable 7 33 34 gradient_step3_time 0 0 [min] 7 34 35 gradient_step3_%B 0 0 [%] 7 35 36 gradient_step4 75 76 applicable 7 35 36 gradient_step4 76 77 not_applicable 7 36 37 gradient_step4_time 0 0 [min] 7 37 38 gradient_step4_%B 0 0 [%] 7 38 39 gradient_step5 77 78 applicable 7 38 39 gradient_step5 78 79 not_applicable 7 39 40 gradient_step5_time 0 0 [min] 7 40 41 gradient_step5_%B 0 0 [%] 7 41 42 gradient_step6 79 80 applicable 7 41 42 gradient_step6 80 81 not_applicable 7 42 43 gradient_step6_time 0 0 [min] 7 43 44 gradient_step6_%B 0 0 [%] 7 44 45 gradient_step7 81 82 applicable 7 44 45 gradient_step7 82 83 not_applicable 7 45 46 gradient_step7_time 0 0 [min] 7 46 47 gradient_step7_%B 0 0 [%] 7 47 48 gradient_step8 83 84 applicable 7 47 48 gradient_step8 84 85 not_applicable 7 48 49 gradient_step8_time 0 0 [min] 7 49 50 gradient_step8_%B 0 0 [%] 7 50 51 gradient_step9 85 86 applicable 7 50 51 gradient_step9 86 87 not_applicable 7 51 52 gradient_step9_time 0 0 [min] 7 52 53 gradient_step9_%B 0 0 [%] 7 53 54 gradient_step10 87 88 applicable 7 53 54 gradient_step10 88 89 not_applicable 7 54 55 gradient_step10_time 0 0 [min] 7 55 56 gradient_step10_%B 0 0 [%] 8 56 57 Spotting_roboter 89 90 not_applicable 8 56 57 Spotting_roboter 90 91 Dionex_Probot 8 56 57 Spotting_roboter 91 92 Bruker_Proteineer_fc 8 57 58 Matrix 92 93 not_applicable 8 57 58 Matrix 93 94 CHCA 8 57 58 Matrix 94 95 Sinapic_acid 8 58 59 Matrix_concentration 0 0 [mg/ml] 8 59 60 Spotting_solution 95 97 not_applicable 8 59 60 Spotting_solution 97 98 0.5%TFA_50%acetonitrile 8 60 61 MALDI_target 98 99 not_applicable 8 60 61 MALDI_target 99 100 stainless_steel 8 60 61 MALDI_target 100 101 Bruker_Prespotted_AnchorChip_PAC384 8 61 62 Number_of_spotted_columns 0 0 [] 8 62 63 Number_of_spotted_rows 0 0 [] 8 63 64 Matrix_addition 0 0 [nl/min] 8 64 65 Collection_time_per_spot 0 0 [sec] 8 65 66 Spot_volume 0 0 [nl] 9 66 67 Ion_source 101 102 not_applicable 9 66 67 Ion_source 102 103 source1 9 66 67 Ion_source 103 104 source2 9 66 67 Ion_source 104 105 source3 9 67 68 Sprayer_type 105 106 not_applicable 9 67 68 Sprayer_type 106 107 qwertz 9 68 69 Sprayer_tip_diameter 0 0 [microm] 9 69 70 Sprayer_inner_diameter 0 0 [microm] 9 70 71 Voltage_supply 107 108 not_applicable 9 70 71 Voltage_supply 108 109 liquid_junction 9 70 71 Voltage_supply 109 110 coated_tip 9 71 72 Spray_voltage 0 0 [kV] 10 72 73 LTQ_tune_file_name 111 112 not_applicable 10 72 73 LTQ_tune_file_name 112 114 Tune_nano_default 10 73 74 Target_settings_LTQ_MS 0 0 [] 10 74 75 Target_settings_FT_MS 0 0 [] 10 75 76 Target_settings_LTQ_MSn 0 0 [] 10 76 77 Target_settings_FT_MSn 0 0 [] 10 77 78 Target_settings_LTQ_MS_time 0 0 [ms] 10 78 79 Target_settings_FT_MS_time 0 0 [ms] 10 79 80 Target_settings_LTQ_MSn_time 0 0 [ms] 10 80 81 Target_settings_FT_MSn_time 0 0 [ms] 10 81 82 Microscans_LTQ_MS 0 0 [] 10 82 83 Microscans_FT_MS 0 0 [] 10 83 84 Microscans_LTQ_MSn 0 0 [] 10 84 85 Microscans_FT_MSn 0 0 [] 11 85 86 Acquistion_time 0 0 [min] 11 86 87 Analyzer 114 115 not_applicable 11 86 87 Analyzer 115 116 LTQ 11 86 87 Analyzer 116 117 Orbitrap 11 86 87 Analyzer 117 118 Iontrap 11 87 88 Orbitrap_Resolution 118 119 not_applicable 11 87 88 Orbitrap_Resolution 119 120 7.5k 11 87 88 Orbitrap_Resolution 120 121 15k 11 87 88 Orbitrap_Resolution 121 122 30k 11 87 88 Orbitrap_Resolution 122 123 60k 11 87 88 Orbitrap_Resolution 123 124 100k 11 88 89 Polarity 124 125 Positive 11 88 89 Polarity 125 126 Negative 11 89 90 Scan_range_first_mass 0 0 [m/z] 11 90 91 Scan_range_last_mass 0 0 [m/z] 11 91 92 Scan_type 126 127 Full 11 91 92 Scan_type 127 128 SIM 11 92 93 Data_type 128 129 Profile 11 92 93 Data_type 129 130 Centroid 12 93 94 MS2_selection 0 0 [Top 12 94 95 Analyzer 130 131 not_applicable 12 94 95 Analyzer 131 132 LTQ 12 94 95 Analyzer 132 133 Orbitrap 12 94 95 Analyzer 133 134 Iontrap 12 95 96 Orbitrap_Resolution 134 135 not_applicable 12 95 96 Orbitrap_Resolution 135 136 7.5k 12 95 96 Orbitrap_Resolution 136 137 15k 12 95 96 Orbitrap_Resolution 137 138 30k 12 95 96 Orbitrap_Resolution 138 139 60k 12 95 96 Orbitrap_Resolution 139 140 100k 12 96 97 LTQ_Scan_rate 140 141 not_applicable 12 96 97 LTQ_Scan_rate 141 142 Normal 12 96 97 LTQ_Scan_rate 142 143 Enhanced 12 96 97 LTQ_Scan_rate 143 144 Turbo 12 96 97 LTQ_Scan_rate 144 145 Zoom 12 96 97 LTQ_Scan_rate 145 146 UltraZoom 12 97 98 Wideband_activation 146 147 not_applicable 12 97 98 Wideband_activation 147 148 enabled 12 97 98 Wideband_activation 148 149 disabled 12 98 99 Inclusion_list 149 150 not_applicable 12 98 99 Inclusion_list 150 151 enabled 12 98 99 Inclusion_list 151 152 disabled 12 99 100 Inclusion_list_width 0 0 [] 12 100 101 inclusion_list_width_unit 152 153 Da 12 100 101 inclusion_list_width_unit 153 154 ppm 12 100 101 inclusion_list_width_unit 154 155 mmu 12 101 102 Number_of_inclusion_list_entries 0 0 [] 12 102 103 Neutral_loss_list 155 156 not_applicable 12 102 103 Neutral_loss_list 156 157 enabled 12 102 103 Neutral_loss_list 157 158 disabled 12 103 104 Neutral_loss_width 0 0 [] 12 104 105 Neutral_loss_width_unit 158 159 Da 12 104 105 Neutral_loss_width_unit 159 160 ppm 12 104 105 Neutral_loss_width_unit 160 161 mmu 12 105 106 Within_top_N 0 0 [] 12 106 107 Static_exclusion_list 161 162 not_applicable 12 106 107 Static_exclusion_list 162 163 enabled 12 106 107 Static_exclusion_list 163 164 disabled 12 107 108 Static_exclusion_list_width 0 0 [] 12 108 109 Static_exclusion_width_unit 164 165 Da 12 108 109 Static_exclusion_width_unit 165 166 ppm 12 108 109 Static_exclusion_width_unit 166 167 mmu 12 109 110 Number_of_exclusion_list_entries 0 0 [] 12 110 111 Dynamic_exclusion 167 168 not_applicable 12 110 111 Dynamic_exclusion 168 169 enabled 12 110 111 Dynamic_exclusion 169 170 disabled 12 111 112 Dynamic_exclusion_width 0 0 [ppm] 12 112 113 Dynamic_exclusion_width_unit 170 171 Da 12 112 113 Dynamic_exclusion_width_unit 171 172 ppm 12 112 113 Dynamic_exclusion_width_unit 172 173 mmu 12 113 114 Dynamic_exclusion_duration 0 0 [s] 12 114 115 Dynamic_exclusion_list_length 0 0 [] 12 115 116 Dynamic_exclusion_early_expiration 173 174 not_applicable 12 115 116 Dynamic_exclusion_early_expiration 174 175 enabled 12 115 116 Dynamic_exclusion_early_expiration 175 177 disabled 12 116 117 Early_expiration_threshold 0 0 [S/N] 12 117 118 Early_expiration_counts_below_threshold 0 0 [counts] 12 118 119 Automatic_charge_state_recognition 177 178 not_applicable 12 118 119 Automatic_charge_state_recognition 178 179 enabled 12 118 119 Automatic_charge_state_recognition 179 180 disabled 12 119 120 Rejection_of_singly_charged_species 180 181 not_applicable 12 119 120 Rejection_of_singly_charged_species 181 182 enabled 12 119 120 Rejection_of_singly_charged_species 182 183 disabled 12 120 121 Minimum_signal_threshold 0 0 [counts] 12 121 122 Activation_type 183 184 not_applicable 12 121 122 Activation_type 184 185 CID 12 121 122 Activation_type 185 186 ETD 12 121 122 Activation_type 186 187 HCD 12 121 122 Activation_type 187 188 PQD 12 122 123 Isolation_width_for_MS2 0 0 [m/z] 12 123 124 Normalized_collision_energy 0 0 [%] 12 124 125 Activation_Q 0 0 [] 12 125 126 Activation_time 0 0 [ms] 12 126 127 Multistage_acivation 188 189 not_applicable 12 126 127 Multistage_acivation 189 190 enabled 12 126 127 Multistage_acivation 190 191 disabled 12 127 128 Data_Dependent_Decision_Tree 191 192 not_applicable 12 127 128 Data_Dependent_Decision_Tree 192 193 enabled 12 127 128 Data_Dependent_Decision_Tree 193 198 disabled 12 128 129 Charge_state_3_mass 0 0 [m/z], 12 129 130 Charge_state_4_mass 0 0 [m/z], 12 130 131 Charge_state_5_mass 0 0 [m/z], 12 131 132 ETD_reaction_time 0 0 [ms], 12 132 133 Enable_supplemental_activation 198 199 not_applicable 12 132 133 Enable_supplemental_activation 199 200 enabled 12 132 133 Enable_supplemental_activation 200 201 disabled 13 133 134 MS3_selection 201 202 not_applicable 13 133 134 MS3_selection 202 203 disabled 13 133 134 MS3_selection 203 204 neutral_loss 13 133 134 MS3_selection 204 205 most_intense 13 133 134 MS3_selection 205 206 repeat_previous_scan_with_different_activation_type 13 133 134 MS3_selection 206 207 selected_mass 13 134 135 Analyzer 207 208 not_applicable 13 134 135 Analyzer 208 209 LTQ 13 134 135 Analyzer 209 210 Orbitrap 13 134 135 Analyzer 210 211 Iontrap 13 135 136 Orbitrap_Resolution 211 212 not_applicable 13 135 136 Orbitrap_Resolution 212 213 7.5k 13 135 136 Orbitrap_Resolution 213 214 15k 13 135 136 Orbitrap_Resolution 214 215 30k 13 135 136 Orbitrap_Resolution 215 216 60k 13 135 136 Orbitrap_Resolution 216 217 100k 13 136 137 LTQ_Scan_rate 217 218 not_applicable 13 136 137 LTQ_Scan_rate 218 219 Normal 13 136 137 LTQ_Scan_rate 219 220 Enhanced 13 136 137 LTQ_Scan_rate 220 221 Turbo 13 136 137 LTQ_Scan_rate 221 222 Zoom 13 136 137 LTQ_Scan_rate 222 223 UltraZoom 13 137 138 Wideband_activation 223 224 not_applicable 13 137 138 Wideband_activation 224 225 enabled 13 137 138 Wideband_activation 225 227 disabled 13 138 139 Minimum_signal_threshold 0 0 [counts] 13 139 140 Activation_type 227 228 not_applicable 13 139 140 Activation_type 228 229 CID 13 139 140 Activation_type 229 230 ETD 13 139 140 Activation_type 230 231 HCD 13 139 140 Activation_type 231 232 PQD 13 140 141 Isolation_width_for_MS2 0 0 [m/z] 13 141 142 Normalized_collision_energy 0 0 [%] 13 142 143 Activation_Q 0 0 [] 13 143 144 Activation_time 0 0 [ms] 13 144 145 Multistage_acivation 232 233 not_applicable 13 144 145 Multistage_acivation 233 234 enabled 13 144 145 Multistage_acivation 234 235 disabled 14 145 146 Un-centroiding_Peak_half_width 0 0 [Da] 14 146 147 Un-centroiding_Data_points_per_Da 0 0 [] 14 147 148 Un-centroiding_Always_uncentroid 235 236 not_applicable 14 147 148 Un-centroiding_Always_uncentroid 236 237 enabled 14 147 148 Un-centroiding_Always_uncentroid 237 238 disabled 14 148 149 Re-gridding_Data_points_per_Da 0 0 [] 14 149 150 Multi-Format_Spectrum_Preferred_type 238 239 not_applicable 14 149 150 Multi-Format_Spectrum_Preferred_type 239 240 Profile 14 149 150 Multi-Format_Spectrum_Preferred_type 240 241 Centroided 14 150 151 Peaks_Minimum_number 0 0 [] 14 151 152 Peaks_Maximum_charge 0 0 [] 14 152 153 Aggregation_Scan_group_aggregation_method 241 242 not_applicable 14 152 153 Aggregation_Scan_group_aggregation_method 242 243 Sum 14 152 153 Aggregation_Scan_group_aggregation_method 243 244 none 15 153 154 Un-centroiding_Peak_half_width 0 0 [Da] 15 154 155 Un-centroiding_Data_points_per_Da 0 0 [] 15 155 156 Un-centroiding_Always_uncentroid 244 245 not_applicable 15 155 156 Un-centroiding_Always_uncentroid 245 246 enabled 15 155 156 Un-centroiding_Always_uncentroid 246 247 disabled 15 156 157 Re-gridding_Data_points_per_Da 0 0 [] 15 157 158 Multi-Format_Spectrum_Preferred_type 247 248 not_applicable 15 157 158 Multi-Format_Spectrum_Preferred_type 248 249 Profile 15 157 158 Multi-Format_Spectrum_Preferred_type 249 250 Centroided 15 158 159 Peaks_Minimum_number 0 0 [] 15 159 160 Peaks_Maximum_charge 0 0 [] 15 160 161 Peaks_Use_precursor_charge_as_maximum 250 251 not_applicable 15 160 161 Peaks_Use_precursor_charge_as_maximum 251 252 enabled 15 160 161 Peaks_Use_precursor_charge_as_maximum 252 253 disabled 15 161 162 Precursor_charge_1st_choice 253 254 not_applicable 15 161 162 Precursor_charge_1st_choice 254 255 Try_to_re-determine_charge_from_parent_scan 15 161 162 Precursor_charge_1st_choice 255 256 If_available_take_charge_from_file 15 161 162 Precursor_charge_1st_choice 256 257 Use_default_charges 15 162 163 Precursor_charge_2nd_choice 257 258 not_applicable 15 162 163 Precursor_charge_2nd_choice 258 259 Try_to_re-determine_charge_from_parent_scan 15 162 163 Precursor_charge_2nd_choice 259 260 If_available_take_charge_from_file 15 162 163 Precursor_charge_2nd_choice 260 261 Use_default_charges 15 163 164 Precursor_charge_3rd_choice 261 262 not_applicable 15 163 164 Precursor_charge_3rd_choice 262 263 Try_to_re-determine_charge_from_parent_scan 15 163 164 Precursor_charge_3rd_choice 263 264 If_available_take_charge_from_file 15 163 164 Precursor_charge_3rd_choice 264 265 Use_default_charges 15 164 165 Precursor_charge_Default_charge_range_min 0 0 [] 15 165 166 Precursor_charge_Default_charge_range_max 0 0 [] 15 166 167 Precursor_charge_Ignore_singly_charged_precursors 265 266 not_applicable 15 166 167 Precursor_charge_Ignore_singly_charged_precursors 266 267 enabled 15 166 167 Precursor_charge_Ignore_singly_charged_precursors 267 268 disabled 15 167 168 Precursor_selection_Search_within 0 0 [m/z] 15 168 169 Precursor_selection_Re-determine_precursor_m/z_value_when_possible 268 269 not_applicable 15 168 169 Precursor_selection_Re-determine_precursor_m/z_value_when_possible 269 270 enabled 15 168 169 Precursor_selection_Re-determine_precursor_m/z_value_when_possible 270 271 disabled 15 169 170 Aggregation_Scan_group_aggregation_method 271 272 not_applicable 15 169 170 Aggregation_Scan_group_aggregation_method 272 273 none 15 169 170 Aggregation_Scan_group_aggregation_method 273 274 Time_Domain 16 170 171 Group_assignment_Minimum_precursor_Mr 0 0 [Da] 16 171 172 Group_assignment_Maximum_precursor_Mr 0 0 [Da] 16 172 173 Group_assignment_Precursor_m/z_tolerance 0 0 [m/z] 16 173 174 Group_assignment_Maximum_intermediate_time 0 0 [s] 16 174 175 Group_assignment_Maximum_intermediate_scan_count 0 0 [scan_counts] 16 175 176 Group_assignment_Use_intermediate_scan_count_where_possible 274 275 not_applicable 16 175 176 Group_assignment_Use_intermediate_scan_count_where_possible 275 276 enabled 16 175 176 Group_assignment_Use_intermediate_scan_count_where_possible 276 277 disabled 16 176 177 Group_assignment_Collapse_MSn_into_precursor 277 278 not_applicable 16 176 177 Group_assignment_Collapse_MSn_into_precursor 278 279 enabled 16 176 177 Group_assignment_Collapse_MSn_into_precursor 279 280 disabled 16 177 178 Group_filtering_Minimum_number_of_scans 0 0 [scan_counts] 17 178 179 Filtering_Correlation_threshold_Rho 0 0 [] 17 179 180 Filtering_Minimum_signal-to-noise 0 0 [S/N] 17 180 181 Filtering_Minimum_peak 0 0 [m/z] 17 181 182 Filtering_Maximum_peak 0 0 [m/z] 17 182 183 Peak_profile_Minimum_peak_width 0 0 [Da] 17 183 184 Peak_profile_Expected_peak_width 0 0 [Da] 17 184 185 Peak_profile_Maximum_peak_width 0 0 [Da] 17 185 186 Peak_profile_Reject_outliers 280 281 not_applicable 17 185 186 Peak_profile_Reject_outliers 281 282 enabled 17 185 186 Peak_profile_Reject_outliers 282 283 disabled 17 186 187 General_Apply_baseline_correction 283 284 not_applicable 17 186 187 General_Apply_baseline_correction 284 285 enabled 17 186 187 General_Apply_baseline_correction 285 286 disabled 17 187 188 General_Fit_method 286 287 not_applicable 17 187 188 General_Fit_method 287 288 Isotope_distribution 17 187 188 General_Fit_method 288 289 Single_peak 17 188 189 General_Maximum_iterations_per_scan 0 0 [] 17 189 190 Single_peak_window_Pick_single_peaks_in_this_range_(eg._Reporter_ions) 289 290 not_applicable 17 189 190 Single_peak_window_Pick_single_peaks_in_this_range_(eg._Reporter_ions) 290 291 enabled 17 189 190 Single_peak_window_Pick_single_peaks_in_this_range_(eg._Reporter_ions) 291 292 disabled 17 190 191 Single_peak_window_Minimum_peak 0 0 [m/z] 17 191 192 Single_peak_window_Maximum_peak 0 0 [m/z] 18 192 193 Filtering_Correlation_threshold_Rho 0 0 [] 18 193 194 Filtering_Minimum_signal-to-noise 0 0 [S/N] 18 194 195 Filtering_Minimum_peak 0 0 [m/z] 18 195 196 Filtering_Maximum_peak 0 0 [m/z] 18 196 197 Peak_profile_Minimum_peak_width 0 0 [Da] 18 197 198 Peak_profile_Expected_peak_width 0 0 [Da] 18 198 199 Peak_profile_Maximum_peak_width 0 0 [Da] 18 199 200 Peak_profile_Reject_outliers 292 293 not_applicable 18 199 200 Peak_profile_Reject_outliers 293 294 enabled 18 199 200 Peak_profile_Reject_outliers 294 295 disabled 18 200 201 General_Same_as_MS_peak_picking 295 296 not_applicable 18 200 201 General_Same_as_MS_peak_picking 296 297 enabled 18 200 201 General_Same_as_MS_peak_picking 297 298 disabled 18 201 202 General_Apply_baseline_correction 298 299 not_applicable 18 201 202 General_Apply_baseline_correction 299 300 enabled 18 201 202 General_Apply_baseline_correction 300 301 disabled 18 202 203 General_Fit_method 301 302 not_applicable 18 202 203 General_Fit_method 302 303 Isotope_distribution 18 202 203 General_Fit_method 303 304 Single_peak 18 203 204 General_Maximum_iterations_per_scan 0 0 [] 18 204 205 Single_peak_window_Pick_single_peaks_in_this_range_(eg._Reporter_ions) 304 305 not_applicable 18 204 205 Single_peak_window_Pick_single_peaks_in_this_range_(eg._Reporter_ions) 305 306 enabled 18 204 205 Single_peak_window_Pick_single_peaks_in_this_range_(eg._Reporter_ions) 306 307 disabled 18 205 206 Single_peak_window_Minimum_peak 0 0 [m/z] 18 206 207 Single_peak_window_Maximum_peak 0 0 [m/z] 19 207 208 Search_engine 307 308 Mascot 19 207 208 Search_engine 308 309 XTandem 19 208 209 Database 309 310 IPI_human 19 208 209 Database 310 311 IPI_mouse 19 208 209 Database 311 312 MSDB 19 208 209 Database 312 313 NCBInr 19 208 209 Database 313 314 SwissProt 19 208 209 Database 314 315 Tremble 19 208 209 Database 315 316 NCBInrPlus 19 209 210 Create_decoy_database_on_the_fly 316 317 enabled 19 209 210 Create_decoy_database_on_the_fly 317 318 disabled 19 210 211 Taxonomy 318 319 not_applicable 19 210 211 Taxonomy 319 320 Archaea 19 210 211 Taxonomy 320 321 Eukaryota 19 210 211 Taxonomy 321 322 Metazoa 19 210 211 Taxonomy 322 323 C_elegans 19 210 211 Taxonomy 323 324 D_melanogaster 19 210 211 Taxonomy 324 325 Mammalia 19 210 211 Taxonomy 325 326 Homo_sapiens 19 210 211 Taxonomy 326 327 Mus_musculus 19 210 211 Taxonomy 327 328 Rattus 19 210 211 Taxonomy 328 329 Other_mammalia 19 210 211 Taxonomy 329 330 Xenopus_laevis 19 210 211 Taxonomy 330 331 Fungi 19 210 211 Taxonomy 331 332 S_cerevisiae 19 210 211 Taxonomy 332 333 Viridiplantae 19 210 211 Taxonomy 333 334 Bacteria 19 210 211 Taxonomy 334 335 Actinobacteria 19 210 211 Taxonomy 335 336 Firmicutes 19 210 211 Taxonomy 336 337 Proteobacteria 19 210 211 Taxonomy 337 338 Viruses 19 211 212 Fixed_modifications 338 339 Carbamidomethyl_C 19 211 212 Fixed_modifications 339 340 Carboxymethyl_C 19 211 212 Fixed_modifications 340 341 iTRAQ4Plex_Nterm 19 211 212 Fixed_modifications 341 342 iTRAQ4Plex_K 19 211 212 Fixed_modifications 342 343 iTRAQ8Plex_Nterm 19 211 212 Fixed_modifications 343 344 iTRAQ8Plex_K 19 211 212 Fixed_modifications 344 345 18O_1_label_Cterm 19 211 212 Fixed_modifications 345 346 18O_2_label_Cterm 19 211 212 Fixed_modifications 346 347 TMT6plex_K 19 211 212 Fixed_modifications 347 348 TMT6plex_Nterm 19 212 213 Variable_modifications 348 349 pyro-Glu_Nterm_Q 19 212 213 Variable_modifications 349 350 pyro-Glu_Nterm_E 19 212 213 Variable_modifications 350 351 HexNac_ST 19 212 213 Variable_modifications 351 352 Oxidation_M 19 212 213 Variable_modifications 352 353 Phospho_ST 19 212 213 Variable_modifications 353 354 Phospho_Y 19 213 214 Enzyme 354 355 ArgC 19 213 214 Enzyme 355 356 AspN 19 213 214 Enzyme 356 357 AspN_ambic 19 213 214 Enzyme 357 358 Chymotrypsin 19 213 214 Enzyme 358 359 CNBr 19 213 214 Enzyme 359 360 CNBr+Trypsin 19 213 214 Enzyme 360 361 Formic_acid 19 213 214 Enzyme 361 362 LysC 19 213 214 Enzyme 362 363 LysC/P 19 213 214 Enzyme 363 364 LysN 19 213 214 Enzyme 364 365 PepsinA 19 213 214 Enzyme 365 366 Trypsin+Chymotrypsin 19 213 214 Enzyme 366 367 Trypsin 19 213 214 Enzyme 367 368 Trypsin/P 19 213 214 Enzyme 368 369 V8-DE 19 213 214 Enzyme 369 370 V8-E 19 213 214 Enzyme 370 371 semiTrypsin 19 213 214 Enzyme 371 372 LysC+AspN 19 213 214 Enzyme 372 373 none 19 214 215 Max_missed_cleavages 0 0 [] 19 215 216 Peptide_charge 373 374 2+_3+ 19 216 217 Number_of_allowed_C13 0 0 [] 19 217 218 Mass 374 375 Monoisotopic 19 217 218 Mass 375 376 Average 19 218 219 Peptide_tolerance 0 0 [] 19 219 220 Peptide_tolerance_unit 376 377 ppm 19 219 220 Peptide_tolerance_unit 377 378 Da 19 219 220 Peptide_tolerance_unit 378 379 mmu 19 220 221 Fragment_tolerance 0 0 [Da] 19 221 222 Error_tolerant_search 379 380 enabled 19 221 222 Error_tolerant_search 380 381 disabled 19 222 223 Quantitation 381 382 none 19 222 223 Quantitation 382 383 iTRAQ_4plex 19 222 223 Quantitation 383 384 iTRAQ_8plex 19 222 223 Quantitation 384 385 18O_corrected_multiplex 19 222 223 Quantitation 385 386 SILAC_K+6_R+6_multiplex 19 222 223 Quantitation 386 387 SILAC_K+6_R+10 19 222 223 Quantitation 387 388 TMT_6plex 19 222 223 Quantitation 388 389 18O_corrected 19 222 223 Quantitation 389 390 15N_metabolic 19 223 -1 Instrument 390 391 Default 19 223 -1 Instrument 391 392 ESI-QUAD-TOF 19 223 -1 Instrument 392 393 MALDI-TOF-PSD 19 223 -1 Instrument 393 394 ESI-TRAP 19 223 -1 Instrument 394 395 ESI-QUAD 19 223 -1 Instrument 395 396 ESI-FTICR 19 223 -1 Instrument 396 397 MALDI-TOF-TOF 19 223 -1 Instrument 397 398 ESI-4SECTOR 19 223 -1 Instrument 398 399 FTMS-ECD 19 223 -1 Instrument 399 400 ETD-TRAP 19 223 -1 Instrument 400 401 MALDI-QUAD-TOF 19 223 -1 Instrument 401 -1 MALDI-QIT-TOF