MOUSE experiment annotation
30-10-2001; last update: 3-12-2001

Technical annotations: based on work of Nicole Hauser, Judith Boer, Rosa Arribas, Frank Diehl; adopted by Alexei Drobyshev and Tamara Korica, who considerded the whole list to be MIAME 1.0 complient.

Mouse specific annotations: Martin Hrabe de Angelis, Marcus Frohme and Johannes Beckers.

References, images (tiff format), a list of array elements incl. controls (including gene/clone IDs, array location, descriptions and functional catalogue entries for each spot) as well as normalization strategies and algorithms are not included here but will be available in the results section or directly from the authors.

technical_annotations

array

6001 - array_source

6002 - array_series

6003 - array_individual

6004 - array_support_width

6005 - array_support_length

6006 - array_surface_chemistry

6007 - support_manufacturer

6008 - Corning_support_brand

6009 - TeleChem_support_brand

6010 - spotted_material

6011 - PCR

6012 - external_controls_spotted

6013 - number_of_elements_on_array_(without_duplicates)

6014 - elements_spotted_as

6015 - spot_resolution

microns

6016 - spotted_material_purification

6017 - spotting_buffer

6018 - spotting_robot

6019 - spotting_pins

6020 - relative_humidity

6341 - relative_humidity

6021 - temperature

6342 - temperature

deg.C

6022 - postprocessing

6023 - readfile

6343 - array_hybridisation

hybridisation

RNA_preparation

6024 - material_source

6025 - preparation_of_total_RNA

6026 - preparation_of_PolyA+

labeling

6027 - amount_of_RNA

microgram

6344 - amount_of_cDNA

microgram

6028 - enzym

6029 - priming

6030 - nucleotide

6031 - nucleotide_removal

6032 - label

6033 - label_incorporation_rate

hybridisation_conditions

6034 - buffer

6035 - prehybridization_without_target

6036 - pre_hyb_temperature

deg.C

6345 - pre_hyb_length

min

6037 - competitors

6038 - hybridisation_device

6039 - hybridisation_instrument

6040 - hybridisation_temp

deg.C

6041 - buffer_volume

microl

6042 - cover_slip_width

6348 - cover_slip_heigth

6043 - cover_slip_material

6044 - cover_slip_provider

6045 - cover_slip_spacer_thickness_(0_for_none)

6046 - spikes_included

6047 - hybridization_length

stringency_wash

6048 - wash_buffer

6049 - times

6050 - wash_length

min

6051 - temperature

deg.C

6052 - drying

detection

6053 - measuring_device

6054 - scanning_software

6056 - spacial_resolution

microm

6057 - PMT_setting_applicable

6058 - PMT_setting

6059 - laser_power_setting_applicable

6060 - laser_power_setting

6061 - imaging_software

6062 - background_correction

6063 - spot_detection

6064 - spot_dimension_(diameter)

microm

6065 - spot_size

6067 - intensity_measurement

sample

6068 - organism

submission

6069 - date_of_entry_day

6070 - date_of_entry_month

6071 - date_of_entry_year

6072 - experimentator_array_production

6073 - experimentator_labelling

6074 - experimentator_RNA_preparation

mouse_annotations

mouse_basic_information

no_of_mice_in_array_experiment

6075 - no_of_mice_in_array_exp.

mouse_IDs

6076 - ID1

6077 - ID2

6078 - ID3

6079 - ID4

6080 - ID5

6081 - ID6

6082 - ID7

6083 - ID8

6084 - mouse_strain

6085 - sex

zygosity

6086 - animals_in_experiment

age

6087 - days_post_partum

6088 - embryonic_stage__E

mutant_ID

6347 - mutant_or_WT

6089 - ABE

6090 - AEY

6091 - AGA

6092 - ALD

6093 - ALI

6094 - ATE

6095 - BCC

6096 - CCO

6097 - CHO

6098 - CRA

6099 - DCC

6100 - DEA

6101 - DSK

6102 - GLS

6103 - HST

6104 - HWE

6105 - IEH

6106 - IEL

6107 - KTA

6108 - LEU

6109 - MVD

6110 - MVU

6111 - PAN

6112 - RCO

6113 - RP

6114 - SCO

6115 - SMA

6116 - SOW

6117 - TUM

6118 - UND

6119 - WBE

6120 - WBS

facility_room

6121 - room_no

pathogen_status

6122 - stage

tissue_sampling_information

6123 - mode_of_killing

6124 - tissue_dissecting_person

date_of_dissection

6125 - YYMMDD

6126 - tissue_in_experiment

phenotype_variance_information

variance_in_sex

6127 - sex_dependent_differences_in_phenotype

6128 - fertility

6129 - sex_differences_in_litters

zygosity_variances

6130 - heterozygotes/homozygotes_differences

age_dependency

6131 - phenotype_characteristics_become_obvious

6132 - viability

genetic_description

6133 - Mode_of_inheritance

Chromosomal_position

6134 - position

6346 - chromosome

CCP_screen_-_basic_hematology

white_blood_cell_count_(WBC)

6135 - lower_value

Mio/mm3

6136 - upper_value

Mio/mm3

6137 - categorized

red_blood_cell_count_(RBC)

6138 - lower_value

Mio/mm3

6139 - upper_value

Mio/mm3

6140 - categorized

hematocrit_(HCT)

6141 - lower_value

6142 - upper_value

6143 - categorized

mean_corpuscular_volume_(MCV)

6144 - lower_value

cm3

6145 - upper_value

cm3

6146 - categorized

mean_corpuscular_hemoglobin_(MCH)

6147 - lower_value

6148 - upper_value

6149 - categorized

mean_corpuscular_hemoglobin_concentration_(MCHC)

6150 - lower_value

g/dl

6151 - upper_value

g/dl

6152 - categorized

platelets_(PLT)

6153 - lower_value

no/nl

6154 - upper_value

no/nl

6155 - categorized

CCP_screen_-_differential_blood_count

Segmented_and_not_segmented_neutrophils_(SEG)

6156 - lower_value

6157 - upper_value

6158 - categorized

lymphocytes_(LYM)

6159 - lower_value

6160 - upper_value

6161 - categorized

monocytes_(MOZ)

6162 - lower_value

6163 - upper_value

6164 - categorized

eosinophils_(EOS)

6165 - lower_value

6166 - upper_value

6167 - categorized

basophils_(BAS)

6168 - lower_value

6169 - upper_value

6170 - categorized

CCP_screen_-_plasma_enzymes_activities

Alkaline_phophatase_(AP)

6171 - lower_value

U/l

6172 - upper_value

U/l

6173 - categorized

alpha-Amylase_(AMY)

6174 - lower_value

U/l

6175 - upper_value

U/l

6176 - categorized

creatine_kinase_(CK)

6177 - lower_value

U/l

6178 - upper_value

U/l

6179 - categorized

aspartate-aminotransferase_(AST)

6180 - lower_value

U/l

6181 - upper_value

U/l

6182 - categorized

alanine-aminotrasferase_(AST)

6183 - lower_value

U/l

6184 - upper_value

U/l

6185 - categorized

CCP_screen_-_plasma_concentrations_of_specific_metabolites

Glucose_(GLS)

6186 - lower_value

mg/dl

6187 - upper_value

mg/dl

6188 - categorized

cholesterol_(CHO)

6189 - lower_value

mg/dl

6190 - upper_value

mg/dl

6191 - categorized

triglycerides_(TGL)

6192 - lower_value

mg/dl

6193 - upper_value

mg/dl

6194 - categorized

total_protein_(TP)

6195 - lower_value

g/dl

6196 - upper_value

g/dl

6197 - categorized

uric_acid_(HRE)

6198 - lower_value

mg/dl

6199 - upper_value

mg/dl

6200 - categorized

urea_(HST)

6201 - lower_value

mg/dl

6202 - upper_value

mg/dl

6203 - categorized

creatinine_(CRE)

6204 - lower_value

mg/dl

6205 - upper_value

mg/dl

6206 - categorized

CCP_screen_-_plasma_concentrations_of_electrolytes

potassium_(KAL)

6207 - lower_value

mmol/l

6208 - upper_value

mmol/l

6209 - categorized

sodium_(NAT)

6210 - lower_value

mmol/l

6211 - upper_value

mmol/l

6212 - categorized

chloride_(CHL)

6213 - lower_value

mmol/l

6214 - upper_value

mmol/l

6215 - categorized

calcium_(CAL)

6216 - lower_value

mmol/l

6217 - upper_value

mmol/l

6218 - categorized

inorganic_phophate_(ANP)

6219 - lower_value

mmol/l

6220 - upper_value

mmol/l

6221 - categorized

biochem._metabolites__screen_-_AA

Amino_acids

6222 - -

biochem._metabolites__screen_-_AC

Acylcarnitines

6223 - -

lysosomal_enzymes_screen

beta-hexosaminidase

6224 - lower_value

U/l

6225 - upper_value

U/l

6226 - categorized

beta-mannosidase

6227 - lower_value

U/l

6228 - upper_value

U/l

6229 - categorized

beta-galactosidase

6230 - lower_value

U/l

6231 - upper_value

U/l

6232 - categorized

lysosomal_sulfatase

6233 - lower_value

U/l

6234 - upper_value

U/l

6235 - categorized

IP_screen_-_basal_immunoglobulin_levels

IgM

6236 - lower_value

g/l

6237 - upper_value

g/l

6238 - categorized

IgG1

6239 - lower_value

g/l

6240 - upper_value

g/l

6241 - categorized

IgG2a

6242 - lower_value

g/l

6243 - upper_value

g/l

6244 - categorized

IgG3

6245 - lower_value

g/l

6246 - upper_value

g/l

6247 - categorized

IgA

6248 - lower_value

g/l

6249 - upper_value

g/l

6250 - categorized

IP_screen_-_lymphocytes_populations_and_lineage_markers

Helper-cells_(CD4)

6251 - Helper-cells_(CD4)

T-cells

6252 - cytotoxic_T-cells_(CD8)

6253 - naive_T-cell_subsets

B-cells

6254 - B1

6255 - B2

6256 - mature_B-cells_(CD19+)_?

6257 - naive_B-cells

NK-cells

6258 - NK-cells

Monocytes

6259 - Monocytes

activated_granulocytes

6260 - activated_granulocytes

MHC_class_I_-_expressing_cells

6261 - MHC_class_I-

MHC_class_II_-_expressing_cells

6262 - MHC_class_II-expressing_cells

IP_screen_-_auto-reactive_immunantibodies

antibodies

6263 - against_cardiolipin

6264 - against_pyruvate_dehydrogenase

allergy_screen

Immunglobulin_E_level

6265 - Immunglobulin_E_level

dysmorphology_screen

physical_appearence

6266 - general_physical_condition

6267 - weight

body

6268 - size

6269 - shape

6270 - right-left-abnormylity

head

6271 - skull_shape

6272 - whiskers

6273 - facial_abnormalities

teeth

6274 - lengt

6275 - shape

6276 - color

ears

6277 - size

6278 - form

6279 - color

eyes

6280 - size

6281 - cataracts/pigmentation

limbs

6282 - limbs

digits

6283 - digits_general

6284 - digits_single

6285 - nails

6286 - color

tail

6287 - tail

6288 - color

color

6289 - coat

6290 - coat_structure

6291 - head

6292 - belly

6293 - spots_on_back

6294 - whiskers

6295 - tail

6296 - feet

6297 - nose

6298 - pillae

6299 - skin

6300 - skin_structure

???

6301 - pinnea

physical_appearence_2

6302 - swellings

6303 - carcinoma/tumors

6304 - strength

6305 - gait

6306 - trembling

6307 - cramping

6308 - paralysis

6309 - seizures

6310 - respiration

behaviour

6311 - general_behaviour

6312 - activity

6313 - agressiveness

6314 - exploring

6315 - head_movement

6316 - circling

6317 - click-box-test_/_deafness

6318 - landing_behaviour

6319 - hanging_behaviour

6320 - articulation

environment

6321 - social_structure_in_cage

6322 - cage

6323 - cleanness

6324 - urine

6325 - feces

sex_reversal_screen

sex_reversal

6326 - detection_of_Sry_(PCR)

mitochondrial_diseases_screen

mitochondrial_diseases

6327 - Plasma_concentration_of_lactate

6328 - Morphology_of_mitochondria_by_eletronmicroscopy

behaviour_screen

Hole-board_test

6329 - -

Open-field_test_(tru-scan)

6330 - -

Acoustic_startle_response_with/without_prepulse_inhibition

6331 - -

general_activity_(hyper-_hypoactivity)

6332 - -

cognitive_ability

6333 - -

locomotor_activity

6334 - -

exploratory_activity

6335 - -

anxiety

6336 - -

spatial_learning

6337 - -

social_structure

6338 - -

DNA_repair_sceen

comet_assay

6339 - sensitivity_for_ionizing_radiation

nociceptive_Screen

hotplate_test

6340 - pain_response