oxidative_stress(0510152030) (MCE 5)

condition-dependent annotations:

control

1053 - temporary_additive
1055 - incubation_periodmin

condition 1

1053 - temporary_additive
1055 - incubation_periodmin

condition 2

1053 - temporary_additive
1055 - incubation_periodmin

condition 3

1053 - temporary_additive
1055 - incubation_periodmin

condition 4

1053 - temporary_additive
1055 - incubation_periodmin

condition 5

1053 - temporary_additive
1055 - incubation_periodmin

measurement-dependent annotations:

control

measurement 1 #48

2 - array_series
3 - array_individual
7 - array_hybridisation
16 - label_incorporation_rate%
17 - total_activitycpm
39 - experimentator

measurement 2 #49

2 - array_series
3 - array_individual
7 - array_hybridisation
16 - label_incorporation_rate%
17 - total_activitycpm
39 - experimentator

condition 1

measurement 1 #50

2 - array_series
3 - array_individual
7 - array_hybridisation
16 - label_incorporation_rate%
17 - total_activitycpm
39 - experimentator

measurement 2 #51

2 - array_series
3 - array_individual
7 - array_hybridisation
16 - label_incorporation_rate%
17 - total_activitycpm
39 - experimentator

condition 2

measurement 1 #52

2 - array_series
3 - array_individual
7 - array_hybridisation
16 - label_incorporation_rate%
17 - total_activitycpm
39 - experimentator

measurement 2 #53

2 - array_series
3 - array_individual
7 - array_hybridisation
16 - label_incorporation_rate%
17 - total_activitycpm
39 - experimentator

condition 3

measurement 1 #54

2 - array_series
3 - array_individual
7 - array_hybridisation
16 - label_incorporation_rate%
17 - total_activitycpm
39 - experimentator

measurement 2 #55

2 - array_series
3 - array_individual
7 - array_hybridisation
16 - label_incorporation_rate%
17 - total_activitycpm
39 - experimentator

condition 4

measurement 1 #56

2 - array_series
3 - array_individual
7 - array_hybridisation
16 - label_incorporation_rate%
17 - total_activitycpm
39 - experimentator

measurement 2 #57

2 - array_series
3 - array_individual
7 - array_hybridisation
16 - label_incorporation_rate%
17 - total_activitycpm
39 - experimentator

condition 5

measurement 1 #58

2 - array_series
3 - array_individual
7 - array_hybridisation
16 - label_incorporation_rate%
17 - total_activitycpm
39 - experimentator

measurement 2 #59

2 - array_series
3 - array_individual
7 - array_hybridisation
16 - label_incorporation_rate%
17 - total_activitycpm
39 - experimentator

measurement 3 #60

2 - array_series
3 - array_individual
7 - array_hybridisation
16 - label_incorporation_rate%
17 - total_activitycpm
39 - experimentator

measurement 4 #61

2 - array_series
3 - array_individual
7 - array_hybridisation
16 - label_incorporation_rate%
17 - total_activitycpm
39 - experimentator

constant annotations (unchanged throughout the MCE):

common_annotations

array

1 - array_source
2 - array_series *** measurement - dependent ***
3 - array_individual *** measurement - dependent ***
4 - array_support
67 - array_support_widthmm
68 - array_support_lengthmm
41 - array_surface_chemistry
42 - support_manufacturer
43 - Hybond_support_brand
44 - Pall_support_brand
45 - Corning_support_brand
46 - TeleChem_support_brand
5 - spotted_material
69 - spotted_material_property
70 - number_of_elements_on_array_(without_duplicates)
71 - elements_spotted_as
47 - spotted_material_purification
48 - spotting_buffer
49 - spotting_robot
50 - spotting_pins
51 - relative_humidity
52 - relative_humidity%
53 - temperature
54 - temperaturedeg.C
55 - postprocessing
77 - uv_crosslink_applicable
78 - uv_crosslink_energyx100microJpercm2
6 - readfile
7 - array_hybridisation *** measurement - dependent ***

hybridisation

RNA_preparation

8 - material_source
9 - preparation_of_total_RNA
10 - preparation_of_PolyA+

labeling

11 - amount_of_RNAmicrogram
40 - amount_of_cDNAmicrogram
12 - enzym
13 - priming
14 - nucleotide
56 - nucleotide_removal
15 - label
66 - days_from_calibration_date_applicable
38 - days_from_calibration_dated
16 - label_incorporation_rate *** measurement - dependent ***
17 - total_activity *** measurement - dependent ***

hybridisation_conditions

18 - buffer
57 - prehybridization_without_target
19 - competitors
75 - hybridisation_device
76 - hybridisation_instrument
20 - hybridisation_tempdeg.C
21 - buffer_volumeml
58 - coverslip_used
59 - coverslip_sizemmxmm
22 - hybridisation_lengthh

stringency_wash

23 - wash_buffer
24 - times
25 - wash_lengthmin
26 - temperaturedeg.C

detection

60 - exposure_time_applicable
27 - exposure_timeh
28 - measuring_device
72 - scanning_software
73 - spacial_resolutionmicrom
61 - pixelsizemicromxmicrom
62 - PMT_setting_applicable
63 - PMT_setting%
64 - laser_power_setting_applicable
65 - laser_power_setting%
29 - imaging_software
30 - background_correction
31 - spot_detection
74 - spot_dimension_(diameter)microm
32 - spot_size
33 - intensity_measurement

sample

34 - organism

submission

35 - date_of_entry_day
36 - date_of_entry_month
37 - date_of_entry_year
39 - experimentator *** measurement - dependent ***

organism_specific_annotations

genotype

1035 - strain
1036 - mating_type

transgenes_ordered_by_no_in_y1_genes

1037 - genetic_variation
1038 - transgeneno_in_y1_genes
1056 - 2nd_genetic_variation
1057 - 2nd_transgeneno_in_y1_genes
1058 - 3rd_genetic_variation
1059 - 3rd_transgeneno_in_y1_genes
1060 - 4th_genetic_variation
1061 - 4th_transgeneno_in_y1_genes
1062 - 5th_genetic_variation
1063 - 5th_transgeneno_in_y1_genes

auxotrophic_marker

1039 - LEU2
1040 - URA3
1041 - TRP1
1042 - HIS3
1043 - LYS2
1044 - ADE2

growth_conditions

1066 - culture
1045 - growth_phase
1046 - temperaturedeg.C
1064 - temperature_shift_incubation_periodmin
1047 - energy_metabolism

medium

1048 - base

C_source

1049 - glucose%
1050 - galactose%
1051 - ethanol%
1052 - glycerol%
1065 - sucrose%
1067 - lactate%

additive

1053 - temporary_additive *** condition - dependent ***
1054 - concentrationmM
1055 - incubation_period *** condition - dependent ***