PSEUDOMONAS annotation definitions ---------------------------------- 23-10-2002 Common annotations were compiled by Nicole Hauser, Judith Boer, Rosa Arribas, Frank Diehl and have been checked for MIAME2 compliance. Organism specific part by Diana Stjepandic. heading1no heading1 heading2no heading2 heading3no heading3 1 common_annotations 1 array 1 - 1 common_annotations 2 hybridisation 2 RNA_preparation 1 common_annotations 2 hybridisation 3 labeling 1 common_annotations 2 hybridisation 4 hybridisation_conditions 1 common_annotations 2 hybridisation 5 stringency_wash 1 common_annotations 2 hybridisation 6 detection 1 common_annotations 3 sample 7 - 1 common_annotations 4 submission 8 - 2 organism_specific_annotations 5 genotype 9 - 2 organism_specific_annotations 6 growth_conditions 10 - 2 organism_specific_annotations 7 medium 11 - 2 organism_specific_annotations 7 medium 12 C_source 2 organism_specific_annotations 7 medium 13 additives lastheadingno ano nextano annotation vno nextvno value 1 1 2 array_source 10 11 self_made 1 1 2 array_source 11 12 genome_systems 1 1 2 array_source 12 13 clontech 1 1 2 array_source 13 14 research_genetics 1 2 3 array_series 0 0 [] 1 3 4 array_individual 0 0 [] 1 4 67 array_support 14 15 nylon 1 4 67 array_support 15 16 polypropylene 1 4 67 array_support 16 117 glass 1 67 68 array_support_width 0 0 [mm] 1 68 41 array_support_length 0 0 [mm] 1 41 42 array_surface_chemistry 117 118 unknown_positive_charge 1 41 42 array_surface_chemistry 118 119 poly_L_lysine 1 41 42 array_surface_chemistry 119 120 aldehyde 1 41 42 array_surface_chemistry 120 121 aminosilane 1 42 43 support_manufacturer 121 122 Hybond 1 42 43 support_manufacturer 122 123 Pall 1 42 43 support_manufacturer 123 124 TeleChem 1 42 43 support_manufacturer 124 250 Corning 1 42 43 support_manufacturer 250 125 Quantifoil 1 42 43 support_manufacturer 125 126 diehl 1 42 43 support_manufacturer 126 127 stephan 1 43 44 Hybond_support_brand 127 128 non_Hybond 1 43 44 Hybond_support_brand 128 129 N+ 1 44 45 Pall_support_brand 129 130 non_Pall 1 44 45 Pall_support_brand 130 223 Biodyne_B 1 44 45 Pall_support_brand 223 131 polypropylene 1 45 46 Corning_support_brand 131 132 non_Corning 1 45 46 Corning_support_brand 132 133 CMT_GAPS 1 46 79 TeleChem_support_brand 133 134 non_TeleChem 1 46 79 TeleChem_support_brand 134 135 Aldehyde 1 46 79 TeleChem_support_brand 135 251 SuperAldehyde 1 79 5 Quantifoil_support_brand 251 252 non_Quantifoil 1 79 5 Quantifoil_support_brand 252 253 QMT_Amino 1 79 5 Quantifoil_support_brand 253 254 QMT_Aldehyd 1 79 5 Quantifoil_support_brand 254 17 QMT_Epoxy 1 5 69 spotted_material 17 236 PCR 1 5 69 spotted_material 236 18 cDNA 1 5 69 spotted_material 18 263 spotted_bacteria 1 5 69 spotted_material 263 19 isolated_plasmids 1 5 69 spotted_material 19 20 DNA-oligo 1 5 69 spotted_material 20 200 PNA-oligo 1 69 70 spotted_material_property 200 201 single_stranded 1 69 70 spotted_material_property 201 269 double_stranded 1 70 80 number_of_elements_on_array_(without_duplicates) 0 0 [] 1 80 71 external_controls_spotted 269 270 no 1 80 71 external_controls_spotted 270 202 yes 1 71 47 elements_spotted_as 202 203 single 1 71 47 elements_spotted_as 203 204 duplicate 1 71 47 elements_spotted_as 204 136 triplicate 1 47 48 spotted_material_purification 136 137 non 1 47 48 spotted_material_purification 137 138 isopropanol_precipitation 1 47 48 spotted_material_purification 138 139 QIAquick 1 47 48 spotted_material_purification 139 140 Multiscreen_NU_Millipore 1 48 49 spotting_buffer 140 141 1.5M_NaCl_0.5M_NaOH 1 48 49 spotting_buffer 141 142 28mM_EDC_4.4volpromill_NMI 1 48 49 spotting_buffer 142 143 spottingsolution_by_diehl 1 48 49 spotting_buffer 143 144 MicroSpotting_solution_TeleChem 1 48 49 spotting_buffer 144 145 3xSSC 1 48 49 spotting_buffer 145 255 3xSSC_50%DMSO 1 48 49 spotting_buffer 255 227 3xSSC_1.5M_Betaine_150mM_sodiumphosphate_pH8.5 1 48 49 spotting_buffer 227 228 150mM_sodiumphosphate_pH8.5 1 48 49 spotting_buffer 228 146 150mM_sodiumphosphate_pH8.5_0.01%SDS 1 49 50 spotting_robot 146 147 SDDC-2_ESI 1 49 50 spotting_robot 147 148 Biogrid_Biorobotics 1 49 50 spotting_robot 148 149 Microgrid_II_Biorobotics 1 49 50 spotting_robot 149 150 Omnigrid_Genemachines 1 49 50 spotting_robot 150 151 QArray_Genetix 1 50 51 spotting_pins 151 152 solid 1 50 51 spotting_pins 152 153 SMP-3_Telechem 1 50 51 spotting_pins 153 154 Biogrid_Biorobotics 1 51 52 relative_humidity 154 155 defined 1 51 52 relative_humidity 155 156 estimated 1 51 52 relative_humidity 156 157 unknown(enter_0%) 1 52 53 relative_humidity 0 0 [%] 1 53 54 temperature 157 158 defined 1 53 54 temperature 158 159 estimated 1 53 54 temperature 159 160 unknown(enter_0deg.C) 1 54 55 temperature 0 0 [deg.C] 1 55 77 postprocessing 160 264 neutralizing_by_1.5MNaCL_0.5MTrispH7.5_1mMEDTA 1 55 77 postprocessing 264 161 neutralizing_by_0.3MNaCL_20mMNaH2PO4_2mMEDTA 1 55 77 postprocessing 161 257 2h_at_65deg.C 1 55 77 postprocessing 257 162 4h_at_80deg.C 1 55 77 postprocessing 162 163 succinic_anhydride_Stanford_protocol 1 55 77 postprocessing 163 164 succinic_anhydride_protocol_by_diehl 1 55 77 postprocessing 164 165 BSA_Tigr_protocol 1 55 77 postprocessing 165 256 NaBH4_Telechem_protocol 1 55 77 postprocessing 256 224 Quantifoil_protocol 1 77 78 uv_crosslink_applicable 224 225 no(enter_0) 1 77 78 uv_crosslink_applicable 225 21 yes 1 78 6 uv_crosslink_energy 0 0 [x100microJpercm2] 1 6 7 readfile 0 0 [] 1 7 8 array_hybridisation 0 0 [] 2 8 9 material_source 21 22 fresh 2 8 9 material_source 22 23 frozen 2 8 9 material_source 23 94 RNA_later 2 8 9 material_source 94 24 cDNA_subtraction 2 9 81 preparation_of_total_RNA 24 25 trizol 2 9 81 preparation_of_total_RNA 25 26 columns 2 9 81 preparation_of_total_RNA 26 237 phenol 2 9 81 preparation_of_total_RNA 237 238 trizol+columns 2 9 81 preparation_of_total_RNA 238 95 phenol+columns 2 9 81 preparation_of_total_RNA 95 27 not_applicable 2 81 10 A260_A280_ratio 0 0 [] 2 10 11 preparation_of_PolyA+ 27 28 none 2 10 11 preparation_of_PolyA+ 28 29 dynabeads 2 10 11 preparation_of_PolyA+ 29 30 oligotex 2 10 11 preparation_of_PolyA+ 30 96 cellulose 2 10 11 preparation_of_PolyA+ 96 31 not_applicable 3 11 40 amount_of_RNA 0 0 [microgram] 3 40 12 amount_of_cDNA 0 0 [microgram] 3 12 13 enzym 31 32 superscript 3 12 13 enzym 32 33 AMV 3 12 13 enzym 33 166 M-MLV 3 12 13 enzym 166 97 OmniScript 3 12 13 enzym 97 34 klenow 3 13 14 priming 34 35 oligo_dT 3 13 14 priming 35 36 anchored_oligo_dT 3 13 14 priming 36 37 random_hexamer 3 13 14 priming 37 98 combined_oligo_dT-random_hexamer 3 13 14 priming 98 239 pcr_select 3 13 14 priming 239 240 ClonTech_specific1 3 13 14 priming 240 38 ClonTech_specific2 3 14 56 nucleotide 38 39 dCTP 3 14 56 nucleotide 39 167 dATP 3 14 56 nucleotide 167 168 aa-dUTP 3 14 56 nucleotide 168 169 dUTP 3 56 15 nucleotide_removal 169 170 G50_Pharmacia 3 56 15 nucleotide_removal 170 226 ammium_acetate_isopropanol_precipitation 3 56 15 nucleotide_removal 226 171 Na_acetate_isopropanol_precipitation 3 56 15 nucleotide_removal 171 172 QIAquick_Qiagen 3 56 15 nucleotide_removal 172 173 GFX_columns_Pharmacia 3 56 15 nucleotide_removal 173 40 YM30_Amicon 3 15 66 label 40 41 33P 3 15 66 label 41 42 32P 3 15 66 label 42 43 Cy3 3 15 66 label 43 174 Cy5 3 15 66 label 174 175 Alexa488 3 15 66 label 175 193 Alexa594 3 66 38 days_from_calibration_date_applicable 193 194 yes 3 66 38 days_from_calibration_date_applicable 194 44 no(enter_0d) 3 38 16 days_from_calibration_date 0 0 [d] 3 16 17 label_incorporation_rate 0 0 [%] 3 17 18 total_activity 0 0 [cpm] 4 18 57 buffer 44 229 0.5M_Na_phosphate_pH7.2_7%_SDS 4 18 57 buffer 229 230 5x_SSC_0.1%_SDS 4 18 57 buffer 230 231 Genisphere3DNA 4 18 57 buffer 231 232 Genisphere3DNAformamide 4 18 57 buffer 232 45 3x_SSC_2.5x_denhardts_0.08%_SDS 4 18 57 buffer 45 46 5x_SSC_5x_denhardts_0.5%_SDS 4 18 57 buffer 46 47 4x_SSC_7.2%_Na_sarcosyl 4 18 57 buffer 47 48 Clontech_Express_hyb 4 18 57 buffer 48 258 ambion_Northern_max 4 18 57 buffer 258 221 ambion_slidehyb1 4 18 57 buffer 221 176 3x_SSC_5x_denhardts_1%_SDS_5%_dextransulfate_50%_formamide 4 57 82 prehybridization_without_target 176 177 no 4 57 82 prehybridization_without_target 177 49 yes 4 82 83 pre_hyb_temperature 0 0 [deg.C] 4 83 19 pre_hyb_length 0 0 [min] 4 19 75 competitors 49 50 none 4 19 75 competitors 50 51 tRNA 4 19 75 competitors 51 217 Cot1 4 19 75 competitors 217 52 dA20 4 19 75 competitors 52 53 dA40 4 19 75 competitors 53 241 salmon_sperm 4 19 75 competitors 241 99 Cot1_salmonsperm 4 19 75 competitors 99 100 dA40_Cot1_salmonsperm 4 19 75 competitors 100 101 dA40_Cot1_tRNA_salmonsperm 4 19 75 competitors 101 102 dA40_Cot1_specificoligos_salmonsperm 4 19 75 competitors 102 211 dA40_Cot1_specificoligos_tRNA_salmonsperm 4 75 76 hybridisation_device 211 212 water_bath 4 75 76 hybridisation_device 212 213 rotating_oven 4 76 20 hybridisation_instrument 213 271 hybridisation_bottle 4 76 20 hybridisation_instrument 271 214 hybridization_chamber_ArrayIt 4 76 20 hybridisation_instrument 214 215 hybridisation_chamber_corning 4 76 20 hybridisation_instrument 215 216 hybridisation_chamber_TeleChem 4 76 20 hybridisation_instrument 216 178 hybridisation_chamber_ClonTech 4 20 21 hybridisation_temp 0 0 [deg.C] 4 21 58 buffer_volume 0 0 [ml] 4 58 59 coverslip_used 178 179 no_(enter_size_0) 4 58 59 coverslip_used 179 272 yes 4 59 84 coverslip_size 0 0 [mmxmm] 4 84 85 coverslip_material 272 273 glass 4 84 85 coverslip_material 273 274 plastic 4 85 86 coverslip_provider 274 275 Metzler 4 85 86 coverslip_provider 275 276 Sigma 4 85 86 coverslip_provider 276 277 Roth 4 85 86 coverslip_provider 277 278 Erie_Scientific 4 86 87 coverslip_spacer_thickness_(0_for_none) 0 0 [mm] 4 87 22 spikes_included 278 279 no 4 87 22 spikes_included 279 54 yes 4 22 23 hybridisation_length 0 0 [h] 5 23 24 wash_buffer 54 55 0.1xSSC_0.1%SDS 5 23 24 wash_buffer 55 56 0.6xSSC_1%SDS 5 23 24 wash_buffer 56 222 0.2xSSC_0.1%SDS 5 23 24 wash_buffer 222 233 0.2xSSC 5 23 24 wash_buffer 233 234 0.1xSSC 5 23 24 wash_buffer 234 259 0.06xSSC 5 23 24 wash_buffer 259 57 2xSSC_0.2%SDS 5 23 24 wash_buffer 57 242 40mMNaPipH7_0.1%SDS 5 23 24 wash_buffer 242 280 ClonTech_protocol 5 24 25 times 0 0 [] 5 25 26 wash_length 0 0 [min] 5 26 88 temperature 0 0 [deg.C] 5 88 60 drying 280 281 centrifuge_10_min_500_rpm 5 88 60 drying 281 180 nitrogen 6 60 27 exposure_time_applicable 180 181 yes 6 60 27 exposure_time_applicable 181 58 no_(enter_0h) 6 27 28 exposure_time 0 0 [h] 6 28 72 measuring_device 58 59 MD_storm860_phos 6 28 72 measuring_device 59 60 MD_storm860_red 6 28 72 measuring_device 60 113 MD_storm860_blue 6 28 72 measuring_device 113 114 MD_425 6 28 72 measuring_device 114 265 MD_475A_phos 6 28 72 measuring_device 265 61 MD_typhoon_phos 6 28 72 measuring_device 61 109 Fuji_BAS1500 6 28 72 measuring_device 109 62 Fuji_FLA3000 6 28 72 measuring_device 62 63 BioRad 6 28 72 measuring_device 63 182 ScanArray3000_GSI_Lumonics 6 28 72 measuring_device 182 183 ScanArray5000_GSI_Lumonics 6 28 72 measuring_device 183 205 Axon_4000a_Axon 6 72 73 scanning_software 205 243 Fuji_Image_Reader_FLA3000_3000G_V1.0 6 72 73 scanning_software 243 206 BAS_reader_V2.11 6 72 73 scanning_software 206 207 BAS_reader_V2.26beta 6 72 73 scanning_software 207 208 Storm_scanner_control 6 72 73 scanning_software 208 209 Typhoon_scanner_control_V1.0 6 72 73 scanning_software 209 210 Scan_Array3000_V3.11_Controller_V2.03 6 72 73 scanning_software 210 184 Scan_Array_V2.1 6 73 61 spacial_resolution 0 0 [microm] 6 61 62 pixelsize 0 0 [micromxmicrom] 6 62 63 PMT_setting_applicable 184 185 no(enter_0%) 6 62 63 PMT_setting_applicable 185 186 yes 6 63 64 PMT_setting 0 0 [%] 6 64 65 laser_power_setting_applicable 186 187 no(enter_0%) 6 64 65 laser_power_setting_applicable 187 64 yes 6 65 29 laser_power_setting 0 0 [%] 6 29 30 imaging_software 64 244 AIS 6 29 30 imaging_software 244 65 AIDA_Image_Analyzer_V3.0 6 29 30 imaging_software 65 66 HDG 6 29 30 imaging_software 66 67 XDotsReader 6 29 30 imaging_software 67 68 imagene 6 29 30 imaging_software 68 188 Xdigitise 6 29 30 imaging_software 188 268 GenePixPro_V3.0.6.89 6 29 30 imaging_software 268 189 GenePixPro_V4.0.0.54 6 29 30 imaging_software 189 69 QuantArray 6 30 31 background_correction 69 70 none 6 30 31 background_correction 70 71 local_background 6 30 31 background_correction 71 72 block_background 6 30 31 background_correction 72 73 empty_spots_average 6 30 31 background_correction 73 74 empty_spots_per_block 6 31 74 spot_detection 74 75 all_spots 6 31 74 spot_detection 75 76 only_positive_spots 6 74 32 spot_dimension_(diameter) 0 0 [microm] 6 32 33 spot_size 76 77 fixed 6 32 33 spot_size 77 78 variable 6 33 34 intensity_measurement 78 79 highest_value_in_spot_centre 6 33 34 intensity_measurement 79 80 sum_of_pixels_within_boundary 6 33 34 intensity_measurement 80 282 mean_of_pixels_times_no_of_pixels_within_boundary 6 33 34 intensity_measurement 282 81 median_of_pixels_times_no_of_pixels_within_boundary 7 34 35 organism 81 82 Saccharomyces_cerevisiae 7 34 35 organism 82 83 Arabidopsis_thaliana 7 34 35 organism 83 103 murine_biopsy 7 34 35 organism 103 245 murine_cell_line 7 34 35 organism 245 246 rat_biopsy 7 34 35 organism 246 84 rat_cell_line 7 34 35 organism 84 85 human_biopsy 7 34 35 organism 85 86 human_cell_line 7 34 35 organism 86 192 Bacillus_subtilis 7 34 35 organism 192 199 Trypanosoma_brucei 7 34 35 organism 199 220 Candida_albicans 7 34 35 organism 220 260 Neurospora_crassa 7 34 35 organism 260 266 Drosophila_melanogaster 7 34 35 organism 266 283 Antirrhinum_majus 7 34 35 organism 283 284 Pseudomonas_putida 7 34 35 organism 284 285 Pseudomonas_aeruginosa 7 34 35 organism 285 218 Pseudomonas_fluorescens 8 35 36 date_of_entry_day 0 0 [] 8 36 37 date_of_entry_month 0 0 [] 8 37 39 date_of_entry_year 0 0 [] 8 39 89 experimentator_hybridization_and_washing 218 104 aign 8 39 89 experimentator_hybridization_and_washing 104 235 bastuk 8 39 89 experimentator_hybridization_and_washing 235 115 bauer 8 39 89 experimentator_hybridization_and_washing 115 261 becerra 8 39 89 experimentator_hybridization_and_washing 261 267 beckmann 8 39 89 experimentator_hybridization_and_washing 267 105 bey 8 39 89 experimentator_hybridization_and_washing 105 88 bier 8 39 89 experimentator_hybridization_and_washing 88 248 boer 8 39 89 experimentator_hybridization_and_washing 248 190 bosse 8 39 89 experimentator_hybridization_and_washing 190 196 diehl 8 39 89 experimentator_hybridization_and_washing 196 191 fischer 8 39 89 experimentator_hybridization_and_washing 191 219 grahlmann 8 39 89 experimentator_hybridization_and_washing 219 247 grees 8 39 89 experimentator_hybridization_and_washing 247 87 hasenpuschtheil 8 39 89 experimentator_hybridization_and_washing 87 91 hauser 8 39 89 experimentator_hybridization_and_washing 91 249 kornacker 8 39 89 experimentator_hybridization_and_washing 249 112 kuery 8 39 89 experimentator_hybridization_and_washing 112 107 lagorce 8 39 89 experimentator_hybridization_and_washing 107 90 lombardia 8 39 89 experimentator_hybridization_and_washing 90 108 lutz 8 39 89 experimentator_hybridization_and_washing 108 92 meijer 8 39 89 experimentator_hybridization_and_washing 92 198 mendel 8 39 89 experimentator_hybridization_and_washing 198 195 reile 8 39 89 experimentator_hybridization_and_washing 195 197 scheideler 8 39 89 experimentator_hybridization_and_washing 197 111 schrenk 8 39 89 experimentator_hybridization_and_washing 111 286 steiner 8 39 89 experimentator_hybridization_and_washing 286 110 stjepandic 8 39 89 experimentator_hybridization_and_washing 110 106 sueltmann 8 39 89 experimentator_hybridization_and_washing 106 262 tournu 8 39 89 experimentator_hybridization_and_washing 262 89 werdermann 8 39 89 experimentator_hybridization_and_washing 89 93 wilmer 8 39 89 experimentator_hybridization_and_washing 93 116 wittig 8 39 89 experimentator_hybridization_and_washing 116 287 yin 8 89 90 experimentator_spotting 287 288 aign 8 89 90 experimentator_spotting 288 289 bastuk 8 89 90 experimentator_spotting 289 290 bauer 8 89 90 experimentator_spotting 290 291 becerra 8 89 90 experimentator_spotting 291 292 beckmann 8 89 90 experimentator_spotting 292 293 bey 8 89 90 experimentator_spotting 293 294 bier 8 89 90 experimentator_spotting 294 295 boer 8 89 90 experimentator_spotting 295 296 bosse 8 89 90 experimentator_spotting 296 297 diehl 8 89 90 experimentator_spotting 297 298 fischer 8 89 90 experimentator_spotting 298 299 grahlmann 8 89 90 experimentator_spotting 299 300 grees 8 89 90 experimentator_spotting 300 301 hasenpuschtheil 8 89 90 experimentator_spotting 301 302 hauser 8 89 90 experimentator_spotting 302 303 kornacker 8 89 90 experimentator_spotting 303 304 kuery 8 89 90 experimentator_spotting 304 305 lagorce 8 89 90 experimentator_spotting 305 306 lombardia 8 89 90 experimentator_spotting 306 307 lutz 8 89 90 experimentator_spotting 307 308 meijer 8 89 90 experimentator_spotting 308 309 mendel 8 89 90 experimentator_spotting 309 310 reile 8 89 90 experimentator_spotting 310 311 scheideler 8 89 90 experimentator_spotting 311 312 schrenk 8 89 90 experimentator_spotting 312 313 steiner 8 89 90 experimentator_spotting 313 314 stjepandic 8 89 90 experimentator_spotting 314 315 sueltmann 8 89 90 experimentator_spotting 315 316 tournu 8 89 90 experimentator_spotting 316 317 werdermann 8 89 90 experimentator_spotting 317 318 wilmer 8 89 90 experimentator_spotting 318 319 wittig 8 89 90 experimentator_spotting 319 320 yin 8 89 90 experimentator_spotting 320 321 x 8 90 91 experimentator_RNA_isolation 321 322 aign 8 90 91 experimentator_RNA_isolation 322 323 bastuk 8 90 91 experimentator_RNA_isolation 323 324 bauer 8 90 91 experimentator_RNA_isolation 324 325 becerra 8 90 91 experimentator_RNA_isolation 325 326 beckmann 8 90 91 experimentator_RNA_isolation 326 327 bey 8 90 91 experimentator_RNA_isolation 327 328 bier 8 90 91 experimentator_RNA_isolation 328 329 boer 8 90 91 experimentator_RNA_isolation 329 330 bosse 8 90 91 experimentator_RNA_isolation 330 331 diehl 8 90 91 experimentator_RNA_isolation 331 332 fischer 8 90 91 experimentator_RNA_isolation 332 333 grahlmann 8 90 91 experimentator_RNA_isolation 333 334 grees 8 90 91 experimentator_RNA_isolation 334 335 hasenpuschtheil 8 90 91 experimentator_RNA_isolation 335 336 hauser 8 90 91 experimentator_RNA_isolation 336 337 kornacker 8 90 91 experimentator_RNA_isolation 337 338 kuery 8 90 91 experimentator_RNA_isolation 338 339 lagorce 8 90 91 experimentator_RNA_isolation 339 340 lombardia 8 90 91 experimentator_RNA_isolation 340 341 lutz 8 90 91 experimentator_RNA_isolation 341 342 meijer 8 90 91 experimentator_RNA_isolation 342 343 mendel 8 90 91 experimentator_RNA_isolation 343 344 reile 8 90 91 experimentator_RNA_isolation 344 345 scheideler 8 90 91 experimentator_RNA_isolation 345 346 schrenk 8 90 91 experimentator_RNA_isolation 346 347 steiner 8 90 91 experimentator_RNA_isolation 347 348 stjepandic 8 90 91 experimentator_RNA_isolation 348 349 sueltmann 8 90 91 experimentator_RNA_isolation 349 350 tournu 8 90 91 experimentator_RNA_isolation 350 351 werdermann 8 90 91 experimentator_RNA_isolation 351 352 wilmer 8 90 91 experimentator_RNA_isolation 352 353 wittig 8 90 91 experimentator_RNA_isolation 353 354 yin 8 91 13035 experimentator_labeling 354 355 aign 8 91 13035 experimentator_labeling 355 356 bastuk 8 91 13035 experimentator_labeling 356 357 bauer 8 91 13035 experimentator_labeling 357 358 becerra 8 91 13035 experimentator_labeling 358 359 beckmann 8 91 13035 experimentator_labeling 359 360 bey 8 91 13035 experimentator_labeling 360 361 bier 8 91 13035 experimentator_labeling 361 362 boer 8 91 13035 experimentator_labeling 362 363 bosse 8 91 13035 experimentator_labeling 363 364 diehl 8 91 13035 experimentator_labeling 364 365 fischer 8 91 13035 experimentator_labeling 365 366 grahlmann 8 91 13035 experimentator_labeling 366 367 grees 8 91 13035 experimentator_labeling 367 368 hasenpuschtheil 8 91 13035 experimentator_labeling 368 369 hauser 8 91 13035 experimentator_labeling 369 370 kornacker 8 91 13035 experimentator_labeling 370 371 kuery 8 91 13035 experimentator_labeling 371 372 lagorce 8 91 13035 experimentator_labeling 372 373 lombardia 8 91 13035 experimentator_labeling 373 374 lutz 8 91 13035 experimentator_labeling 374 375 meijer 8 91 13035 experimentator_labeling 375 376 mendel 8 91 13035 experimentator_labeling 376 377 reile 8 91 13035 experimentator_labeling 377 378 scheideler 8 91 13035 experimentator_labeling 378 379 schrenk 8 91 13035 experimentator_labeling 379 380 steiner 8 91 13035 experimentator_labeling 380 381 stjepandic 8 91 13035 experimentator_labeling 381 382 sueltmann 8 91 13035 experimentator_labeling 382 383 tournu 8 91 13035 experimentator_labeling 383 384 werdermann 8 91 13035 experimentator_labeling 384 385 wilmer 8 91 13035 experimentator_labeling 385 386 wittig 8 91 13035 experimentator_labeling 386 13087 yin 9 13035 13036 P_putida_strain 13087 13088 KT2440 9 13035 13036 P_putida_strain 13088 13089 KT2440_w_TOL 9 13035 13036 P_putida_strain 13089 13090 DOT 9 13035 13036 P_putida_strain 13090 13091 IsoF 9 13035 13036 P_putida_strain 13091 13092 OUS82 9 13035 13036 P_putida_strain 13092 13093 RI 9 13036 13037 genetic_variation 13093 13094 WT 9 13036 13037 genetic_variation 13094 13095 mutation 9 13036 13037 genetic_variation 13095 13096 ko 9 13036 13037 genetic_variation 13096 13097 overexpression 9 13036 13037 genetic_variation 13097 13098 inducible_promoter 9 13037 13038 transgene 0 0 [] 10 13038 13039 culture 13098 13099 liquid 10 13038 13039 culture 13099 13100 solid 10 13038 13039 culture 13100 13101 biofilm 10 13038 13039 culture 13101 13102 soil_isolate 10 13039 13040 growth_phase 13102 13103 exponential 10 13039 13040 growth_phase 13103 13104 stationary 10 13040 13041 temperature 0 0 [deg.C] 10 13041 13042 OD600 0 0 [] 11 13042 13047 base 13104 13105 LB 11 13042 13047 base 13105 13107 A10 11 13042 13047 base 13107 13106 ABC 11 13042 13047 base 13106 -1 minimal 11 13047 13043 pH 0 0 [] 12 13043 13044 citrate 0 0 [%] 12 13044 13045 gluconate 0 0 [%] 13 13045 13046 NaCl 0 0 [mM] 13 13046 -1 urea 0 0 [mM]