|Computational steps (how to reproduce the results)|
Next, all the reads mapping at a particular position of the genome are shown (samtools tview). Please use the "Other position" button at the right upper corner to zap through any positions of interest. Matches and mismatches are displayed according to the legend on top of the page, in the upper part color-coded due to mapping quality, in the lower part according to base quality (phred scores).
A third (bottom) part summarizes the mapping (mapping statistics by QualiMap). This summary is shown in a separate frame just as in the previous step. In contrast to the previous step, the links under CONTENTS will take you to the according name tags in any browser (probably because this time there is only one frame on the page).
The numbers are entirely located on top (Summary) of the frame and thus easily exported by one copy/paste action.
Ref. Genome: NC_000962.3
Genome Analysis TK 2.5-2-gf57256b